This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.
Source code for galaxy.tool_shed.galaxy_install.migrate.versions.0006_tools
""" The following tools have been eliminated from the distribution: FASTQ to BAM, SAM to FASTQ, BAM Index Statistics, Estimate Library Complexity, Insertion size metrics for PAIRED data, SAM/BAM Hybrid Selection Metrics, bam/sam Cleaning, Add or Replace Groups, Replace SAM/BAM Header, Paired Read Mate Fixer, Mark Duplicate reads, SAM/BAM Alignment Summary Metrics, SAM/BAM GC Bias Metrics, and Reorder SAM/BAM. The tools are now available in the repository named picard from the main Galaxy tool shed at http://toolshed.g2.bx.psu.edu, and will be installed into your local Galaxy instance at the location discussed above by running the following command. """[docs]def upgrade(migrate_engine): print(__doc__)[docs]def downgrade(migrate_engine): pass