Source code for galaxy.exceptions

"""This module defines Galaxy's custom exceptions.

A Galaxy exception is an exception that extends :class:`MessageException` which
defines an HTTP status code (represented by the `status_code` attribute) and a
default error message.

New exceptions should be defined by adding an entry to `error_codes.json` in this
directory to define a default error message and a Galaxy "error code". A concrete
Python class should be added in this file defining an HTTP status code (as
`status_code`) and error code (`error_code`) object loaded dynamically from
`error_codes.json`.

Reflecting Galaxy's origins as a web application, these exceptions tend to be a
bit web-oriented. However this module is a dependency of modules and tools that
have nothing to do with the web - keep this in mind when defining exception names
and messages.
"""

from ..exceptions.error_codes import error_codes_by_name


[docs]class MessageException(Exception):
    """Most generic Galaxy exception - indicates merely that some exceptional condition happened."""
    # status code to be set when used with API.
    status_code = 400
    # Error code information embedded into API json responses.
    err_code = error_codes_by_name['UNKNOWN']

[docs]    def __init__(self, err_msg=None, type="info", **extra_error_info):
        self.err_msg = err_msg or self.err_code.default_error_message
        self.type = type
        self.extra_error_info = extra_error_info

[docs]    @staticmethod
    def from_code(status_code, message):
        exception_class = MessageException
        if status_code == 404:
            exception_class = ObjectNotFound
        elif status_code / 100 == 5:
            exception_class = InternalServerError
        return exception_class(message)

    def __str__(self):
        return self.err_msg


[docs]class ItemDeletionException(MessageException):
    pass


[docs]class ObjectInvalid(Exception):
    """ Accessed object store ID is invalid """

# Please keep the exceptions ordered by status code


[docs]class ActionInputError(MessageException):
    status_code = 400
    err_code = error_codes_by_name['USER_REQUEST_INVALID_PARAMETER']

[docs]    def __init__(self, err_msg, type="error"):
        super().__init__(err_msg, type)


[docs]class DuplicatedSlugException(MessageException):
    status_code = 400
    err_code = error_codes_by_name['USER_SLUG_DUPLICATE']


[docs]class DuplicatedIdentifierException(MessageException):
    status_code = 400
    err_code = error_codes_by_name['USER_IDENTIFIER_DUPLICATE']


[docs]class ObjectAttributeInvalidException(MessageException):
    status_code = 400
    err_code = error_codes_by_name['USER_OBJECT_ATTRIBUTE_INVALID']


[docs]class ObjectAttributeMissingException(MessageException):
    status_code = 400
    err_code = error_codes_by_name['USER_OBJECT_ATTRIBUTE_MISSING']


[docs]class MalformedId(MessageException):
    status_code = 400
    err_code = error_codes_by_name['MALFORMED_ID']


[docs]class UserInvalidRunAsException(MessageException):
    status_code = 400
    err_code = error_codes_by_name['USER_INVALID_RUN_AS']


[docs]class MalformedContents(MessageException):
    status_code = 400
    err_code = error_codes_by_name['MALFORMED_CONTENTS']


[docs]class UnknownContentsType(MessageException):
    status_code = 400
    err_code = error_codes_by_name['UNKNOWN_CONTENTS_TYPE']


[docs]class RequestParameterMissingException(MessageException):
    status_code = 400
    err_code = error_codes_by_name['USER_REQUEST_MISSING_PARAMETER']


[docs]class ToolMetaParameterException(MessageException):
    status_code = 400
    err_code = error_codes_by_name['USER_TOOL_META_PARAMETER_PROBLEM']


[docs]class ToolMissingException(MessageException):
    status_code = 400
    err_code = error_codes_by_name['USER_TOOL_MISSING_PROBLEM']

[docs]    def __init__(self, err_msg=None, type="info", tool_id=None, **extra_error_info):
        super().__init__(err_msg, type, **extra_error_info)
        self.tool_id = tool_id


[docs]class RequestParameterInvalidException(MessageException):
    status_code = 400
    err_code = error_codes_by_name['USER_REQUEST_INVALID_PARAMETER']


[docs]class ToolInputsNotReadyException(MessageException):
    status_code = 400
    error_code = error_codes_by_name['TOOL_INPUTS_NOT_READY']


[docs]class RealUserRequiredException(MessageException):
    status_code = 400
    error_code = error_codes_by_name['REAL_USER_REQUIRED']


[docs]class AuthenticationFailed(MessageException):
    status_code = 401
    err_code = error_codes_by_name['USER_AUTHENTICATION_FAILED']


[docs]class AuthenticationRequired(MessageException):
    status_code = 403
    # TODO: as 401 and send WWW-Authenticate: ???
    err_code = error_codes_by_name['USER_NO_API_KEY']


[docs]class ItemAccessibilityException(MessageException):
    status_code = 403
    err_code = error_codes_by_name['USER_CANNOT_ACCESS_ITEM']


[docs]class ItemOwnershipException(MessageException):
    status_code = 403
    err_code = error_codes_by_name['USER_DOES_NOT_OWN_ITEM']


[docs]class ConfigDoesNotAllowException(MessageException):
    status_code = 403
    err_code = error_codes_by_name['CONFIG_DOES_NOT_ALLOW']


[docs]class InsufficientPermissionsException(MessageException):
    status_code = 403
    err_code = error_codes_by_name['INSUFFICIENT_PERMISSIONS']


[docs]class UserCannotRunAsException(MessageException):
    status_code = 403
    err_code = error_codes_by_name['USER_CANNOT_RUN_AS']


[docs]class AdminRequiredException(MessageException):
    status_code = 403
    err_code = error_codes_by_name['ADMIN_REQUIRED']


[docs]class UserActivationRequiredException(MessageException):
    status_code = 403
    err_code = error_codes_by_name['USER_ACTIVATION_REQUIRED']


[docs]class ObjectNotFound(MessageException):
    """ Accessed object was not found """
    status_code = 404
    err_code = error_codes_by_name['USER_OBJECT_NOT_FOUND']


[docs]class DeprecatedMethod(MessageException):
    """
    Method (or a particular form/arg signature) has been removed and won't be available later
    """
    status_code = 404
    # TODO:?? 410 Gone?
    err_code = error_codes_by_name['DEPRECATED_API_CALL']


[docs]class Conflict(MessageException):
    status_code = 409
    err_code = error_codes_by_name['CONFLICT']


[docs]class ConfigurationError(Exception):
    status_code = 500
    err_code = error_codes_by_name['CONFIG_ERROR']


[docs]class InconsistentDatabase(MessageException):
    status_code = 500
    err_code = error_codes_by_name['INCONSISTENT_DATABASE']


[docs]class InternalServerError(MessageException):
    status_code = 500
    err_code = error_codes_by_name['INTERNAL_SERVER_ERROR']


[docs]class ToolExecutionError(MessageException):
    status_code = 500
    err_code = error_codes_by_name['TOOL_EXECUTION_ERROR']

[docs]    def __init__(self, err_msg, type="error", job=None):
        super().__init__(err_msg, type)
        self.job = job


[docs]class NotImplemented(MessageException):
    status_code = 501
    err_code = error_codes_by_name['NOT_IMPLEMENTED']


[docs]class InvalidFileFormatError(MessageException):
    status_code = 500
    err_code = error_codes_by_name['INVALID_FILE_FORMAT']


[docs]class ReferenceDataError(MessageException):
    status_code = 500
    err_code = error_codes_by_name['REFERENCE_DATA_ERROR']


[docs]class ServerNotConfiguredForRequest(MessageException):
    # A bit like ConfigDoesNotAllowException but it has nothing to do with the user of the
    # request being "forbidden". It just isn't configured.
    status_code = 501
    err_code = error_codes_by_name['SERVER_NOT_CONFIGURED_FOR_REQUEST']


# non-web exceptions

[docs]class ContainerCLIError(Exception):
[docs]    def __init__(self, msg=None, stdout=None, stderr=None, returncode=None,
                 command=None, subprocess_command=None, **kwargs):
        super().__init__(msg, **kwargs)
        self.stdout = stdout
        self.stderr = stderr
        self.returncode = returncode
        self.command = command
        self.subprocess_command = subprocess_command


[docs]class ContainerNotFound(Exception):
[docs]    def __init__(self, msg=None, container_id=None, **kwargs):
        super().__init__(msg, **kwargs)
        self.container_id = container_id


[docs]class ContainerImageNotFound(Exception):
[docs]    def __init__(self, msg=None, image=None, **kwargs):
        super().__init__(msg, **kwargs)
        self.image = image


[docs]class ContainerRunError(Exception):
[docs]    def __init__(self, msg=None, image=None, command=None, **kwargs):
        super().__init__(msg, **kwargs)
        self.image = image
        self.command = command


[docs]class HandlerAssignmentError(Exception):
[docs]    def __init__(self, msg=None, obj=None, **kwargs):
        super().__init__(msg, **kwargs)
        self.obj = obj