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tool_shed.grids package¶
Submodules¶
tool_shed.grids.admin_grids module¶
-
class
tool_shed.grids.admin_grids.
UserGrid
[source]¶ Bases:
galaxy.webapps.reports.framework.grids.Grid
-
class
UserLoginColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
UserNameColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
GroupsColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RolesColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
ExternalColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
LastLoginColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
StatusColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
EmailColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Users'¶
-
model_class
¶ alias of
galaxy.webapps.tool_shed.model.User
-
default_sort_key
= 'email'¶
-
columns
= [<tool_shed.grids.admin_grids.UserLoginColumn object>, <tool_shed.grids.admin_grids.UserNameColumn object>, <tool_shed.grids.admin_grids.GroupsColumn object>, <tool_shed.grids.admin_grids.RolesColumn object>, <tool_shed.grids.admin_grids.ExternalColumn object>, <tool_shed.grids.admin_grids.LastLoginColumn object>, <tool_shed.grids.admin_grids.StatusColumn object>, <tool_shed.grids.admin_grids.EmailColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
global_actions
= [<galaxy.webapps.reports.framework.grids.GridAction object>]¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>, <galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
standard_filters
= [<galaxy.webapps.reports.framework.grids.GridColumnFilter object>, <galaxy.webapps.reports.framework.grids.GridColumnFilter object>, <galaxy.webapps.reports.framework.grids.GridColumnFilter object>, <galaxy.webapps.reports.framework.grids.GridColumnFilter object>]¶
-
use_paging
= False¶
-
class
-
class
tool_shed.grids.admin_grids.
RoleGrid
[source]¶ Bases:
galaxy.webapps.reports.framework.grids.Grid
-
class
NameColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
DescriptionColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
TypeColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
StatusColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
GroupsColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RepositoriesColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
UsersColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Roles'¶
-
model_class
¶ alias of
galaxy.webapps.tool_shed.model.Role
-
default_sort_key
= 'name'¶
-
columns
= [<tool_shed.grids.admin_grids.NameColumn object>, <tool_shed.grids.admin_grids.DescriptionColumn object>, <tool_shed.grids.admin_grids.GroupsColumn object>, <tool_shed.grids.admin_grids.RepositoriesColumn object>, <tool_shed.grids.admin_grids.UsersColumn object>, <galaxy.webapps.reports.framework.grids.DeletedColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
global_actions
= [<galaxy.webapps.reports.framework.grids.GridAction object>]¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>, <galaxy.webapps.reports.framework.grids.GridOperation object>, <galaxy.webapps.reports.framework.grids.GridOperation object>, <galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
standard_filters
= [<galaxy.webapps.reports.framework.grids.GridColumnFilter object>, <galaxy.webapps.reports.framework.grids.GridColumnFilter object>, <galaxy.webapps.reports.framework.grids.GridColumnFilter object>]¶
-
use_paging
= False¶
-
class
-
class
tool_shed.grids.admin_grids.
GroupGrid
[source]¶ Bases:
galaxy.webapps.reports.framework.grids.Grid
-
class
NameColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
StatusColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RolesColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
UsersColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Groups'¶
-
model_class
¶ alias of
galaxy.webapps.tool_shed.model.Group
-
default_sort_key
= 'name'¶
-
columns
= [<tool_shed.grids.admin_grids.NameColumn object>, <tool_shed.grids.admin_grids.UsersColumn object>, <tool_shed.grids.admin_grids.RolesColumn object>, <tool_shed.grids.admin_grids.StatusColumn object>, <galaxy.webapps.reports.framework.grids.DeletedColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
global_actions
= [<galaxy.webapps.reports.framework.grids.GridAction object>]¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>, <galaxy.webapps.reports.framework.grids.GridOperation object>, <galaxy.webapps.reports.framework.grids.GridOperation object>, <galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
standard_filters
= [<galaxy.webapps.reports.framework.grids.GridColumnFilter object>, <galaxy.webapps.reports.framework.grids.GridColumnFilter object>, <galaxy.webapps.reports.framework.grids.GridColumnFilter object>]¶
-
use_paging
= False¶
-
class
-
class
tool_shed.grids.admin_grids.
ManageCategoryGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.CategoryGrid
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_grids.RepositoriesColumn object>]¶
-
global_actions
= [<galaxy.webapps.reports.framework.grids.GridAction object>]¶
-
col
= <tool_shed.grids.repository_grids.RepositoriesColumn object>¶
-
-
class
tool_shed.grids.admin_grids.
AdminRepositoryGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryGrid
-
class
DeletedColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.HeadsColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <tool_shed.grids.repository_grids.DeprecatedColumn object>, <tool_shed.grids.admin_grids.DeletedColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>, <galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
standard_filters
= []¶
-
default_filter
= {}¶
-
class
-
class
tool_shed.grids.admin_grids.
RepositoryMetadataGrid
[source]¶ Bases:
galaxy.webapps.reports.framework.grids.Grid
-
class
IdColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
NameColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
OwnerColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RevisionColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
ToolsColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
DatatypesColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
WorkflowsColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
DeletedColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
DeprecatedColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
MaliciousColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Repository Metadata'¶
-
model_class
¶
-
default_sort_key
= 'name'¶
-
use_hide_message
= False¶
-
columns
= [<tool_shed.grids.admin_grids.IdColumn object>, <tool_shed.grids.admin_grids.NameColumn object>, <tool_shed.grids.admin_grids.OwnerColumn object>, <tool_shed.grids.admin_grids.RevisionColumn object>, <tool_shed.grids.admin_grids.ToolsColumn object>, <tool_shed.grids.admin_grids.DatatypesColumn object>, <tool_shed.grids.admin_grids.WorkflowsColumn object>, <tool_shed.grids.admin_grids.DeletedColumn object>, <tool_shed.grids.admin_grids.DeprecatedColumn object>, <tool_shed.grids.admin_grids.MaliciousColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
standard_filters
= []¶
-
default_filter
= {}¶
-
use_paging
= False¶
-
class
tool_shed.grids.repository_grid_filter_manager module¶
tool_shed.grids.repository_grids module¶
-
class
tool_shed.grids.repository_grids.
CategoryGrid
[source]¶ Bases:
galaxy.webapps.reports.framework.grids.Grid
-
class
NameColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
DescriptionColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RepositoriesColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Categories'¶
-
model_class
¶
-
template
= '/webapps/tool_shed/category/grid.mako'¶
-
default_sort_key
= 'name'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_grids.RepositoriesColumn object>]¶
-
default_filter
= {}¶
-
global_actions
= []¶
-
operations
= []¶
-
standard_filters
= []¶
-
num_rows_per_page
= 50¶
-
use_paging
= False¶
-
class
-
class
tool_shed.grids.repository_grids.
RepositoryGrid
[source]¶ Bases:
galaxy.webapps.reports.framework.grids.Grid
-
class
NameColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
TypeColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
DescriptionColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
CategoryColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RepositoryCategoryColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
UserColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
EmailColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
EmailAlertsColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
DeprecatedColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Repositories'¶
-
model_class
¶
-
default_sort_key
= 'name'¶
-
use_hide_message
= False¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_grids.TypeColumn object>, <tool_shed.grids.repository_grids.MetadataRevisionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <tool_shed.grids.repository_grids.EmailColumn object>, <tool_shed.grids.repository_grids.RepositoryCategoryColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= []¶
-
standard_filters
= []¶
-
default_filter
= {'deleted': 'False'}¶
-
num_rows_per_page
= 50¶
-
use_paging
= False¶
-
class
-
class
tool_shed.grids.repository_grids.
DockerImageGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryGrid
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <tool_shed.grids.repository_grids.EmailAlertsColumn object>]¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
show_item_checkboxes
= True¶
-
-
class
tool_shed.grids.repository_grids.
EmailAlertsRepositoryGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryGrid
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <tool_shed.grids.repository_grids.EmailAlertsColumn object>, <galaxy.webapps.reports.framework.grids.DeletedColumn object>]¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
global_actions
= [<galaxy.webapps.reports.framework.grids.GridAction object>]¶
-
-
class
tool_shed.grids.repository_grids.
MatchedRepositoryGrid
[source]¶ Bases:
galaxy.webapps.reports.framework.grids.Grid
-
class
NameColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
DescriptionColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RevisionColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
UserColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Matching repositories'¶
-
model_class
¶
-
default_sort_key
= 'Repository.name'¶
-
use_hide_message
= False¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_grids.RevisionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>]¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
standard_filters
= []¶
-
default_filter
= {}¶
-
num_rows_per_page
= 50¶
-
use_paging
= False¶
-
class
-
class
tool_shed.grids.repository_grids.
InstallMatchedRepositoryGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.MatchedRepositoryGrid
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_grids.RevisionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>]¶
-
col
= <tool_shed.grids.repository_grids.UserColumn object>¶
-
-
class
tool_shed.grids.repository_grids.
MyWritableRepositoriesGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryGrid
-
title
= 'Repositories I can change'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.TypeColumn object>, <tool_shed.grids.repository_grids.MetadataRevisionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= []¶
-
use_paging
= False¶
-
-
class
tool_shed.grids.repository_grids.
RepositoriesByUserGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryGrid
-
title
= 'Repositories by user'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_grids.TypeColumn object>, <tool_shed.grids.repository_grids.MetadataRevisionColumn object>, <tool_shed.grids.repository_grids.CategoryColumn object>]¶
-
operations
= []¶
-
standard_filters
= []¶
-
default_filter
= {'deleted': 'False'}¶
-
num_rows_per_page
= 50¶
-
use_paging
= False¶
-
-
class
tool_shed.grids.repository_grids.
RepositoriesInCategoryGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryGrid
-
title
= 'Category'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_grids.TypeColumn object>, <tool_shed.grids.repository_grids.MetadataRevisionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <tool_shed.grids.repository_grids.EmailColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= []¶
-
use_paging
= False¶
-
-
class
tool_shed.grids.repository_grids.
RepositoriesIOwnGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryGrid
-
title
= 'Repositories I own'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.TypeColumn object>, <tool_shed.grids.repository_grids.MetadataRevisionColumn object>, <tool_shed.grids.repository_grids.DeprecatedColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= []¶
-
use_paging
= False¶
-
-
class
tool_shed.grids.repository_grids.
RepositoriesICanAdministerGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryGrid
-
title
= 'Repositories I can administer'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <tool_shed.grids.repository_grids.MetadataRevisionColumn object>, <tool_shed.grids.repository_grids.DeprecatedColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= []¶
-
use_paging
= False¶
-
-
class
tool_shed.grids.repository_grids.
RepositoriesMissingToolTestComponentsGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryGrid
-
title
= 'Repositories with missing tool test components'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.LatestInstallableRevisionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= []¶
-
use_paging
= False¶
-
-
class
tool_shed.grids.repository_grids.
MyWritableRepositoriesMissingToolTestComponentsGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoriesMissingToolTestComponentsGrid
-
title
= 'Repositories I can change with missing tool test components'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.LatestInstallableRevisionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= []¶
-
use_paging
= False¶
-
col
= <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>¶
-
-
class
tool_shed.grids.repository_grids.
DeprecatedRepositoriesIOwnGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoriesIOwnGrid
-
title
= 'Deprecated repositories I own'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.TypeColumn object>, <tool_shed.grids.repository_grids.MetadataRevisionColumn object>, <tool_shed.grids.repository_grids.CategoryColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
use_paging
= False¶
-
-
class
tool_shed.grids.repository_grids.
RepositoriesWithInvalidToolsGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryGrid
-
title
= 'Repositories with invalid tools'¶
-
columns
= [<tool_shed.grids.repository_grids.InvalidToolConfigColumn object>, <tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.LatestInstallableRevisionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>]¶
-
operations
= []¶
-
use_paging
= False¶
-
-
class
tool_shed.grids.repository_grids.
MyWritableRepositoriesWithInvalidToolsGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoriesWithInvalidToolsGrid
-
title
= 'Repositories I can change with invalid tools'¶
-
columns
= [<tool_shed.grids.repository_grids.InvalidToolConfigColumn object>, <tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.LatestInstallableRevisionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>]¶
-
operations
= []¶
-
use_paging
= False¶
-
col
= <tool_shed.grids.repository_grids.UserColumn object>¶
-
-
class
tool_shed.grids.repository_grids.
RepositoryMetadataGrid
[source]¶ Bases:
galaxy.webapps.reports.framework.grids.Grid
-
class
RepositoryNameColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RepositoryTypeColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RepositoryOwnerColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
ChangesetRevisionColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
MaliciousColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
DownloadableColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
HasRepositoryDependenciesColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
IncludesDatatypesColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
IncludesToolsColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
IncludesToolDependenciesColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
IncludesWorkflowsColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Repository metadata'¶
-
model_class
¶
-
default_sort_key
= 'Repository.name'¶
-
columns
= [<tool_shed.grids.repository_grids.RepositoryNameColumn object>, <tool_shed.grids.repository_grids.RepositoryNameColumn object>, <tool_shed.grids.repository_grids.RepositoryOwnerColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= []¶
-
standard_filters
= []¶
-
default_filter
= {'malicious': 'False'}¶
-
num_rows_per_page
= 50¶
-
use_paging
= False¶
-
class
-
class
tool_shed.grids.repository_grids.
RepositoryDependenciesGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryMetadataGrid
-
class
RequiredRepositoryColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Valid repository dependency definitions in this tool shed'¶
-
default_sort_key
= 'Repository.name'¶
-
columns
= [<tool_shed.grids.repository_grids.RequiredRepositoryColumn object>, <tool_shed.grids.repository_grids.RepositoryNameColumn object>, <tool_shed.grids.repository_grids.RepositoryOwnerColumn object>, <tool_shed.grids.repository_grids.ChangesetRevisionColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
class
-
class
tool_shed.grids.repository_grids.
DatatypesGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryMetadataGrid
-
class
DatatypesColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Custom datatypes in this tool shed'¶
-
default_sort_key
= 'Repository.name'¶
-
columns
= [<tool_shed.grids.repository_grids.DatatypesColumn object>, <tool_shed.grids.repository_grids.RepositoryNameColumn object>, <tool_shed.grids.repository_grids.RepositoryOwnerColumn object>, <tool_shed.grids.repository_grids.ChangesetRevisionColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
class
-
class
tool_shed.grids.repository_grids.
ToolDependenciesGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryMetadataGrid
-
class
ToolDependencyColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Tool dependency definitions in this tool shed'¶
-
default_sort_key
= 'Repository.name'¶
-
columns
= [<tool_shed.grids.repository_grids.ToolDependencyColumn object>, <tool_shed.grids.repository_grids.RepositoryNameColumn object>, <tool_shed.grids.repository_grids.RepositoryOwnerColumn object>, <tool_shed.grids.repository_grids.ChangesetRevisionColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
class
-
class
tool_shed.grids.repository_grids.
ToolsGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryMetadataGrid
-
class
ToolsColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Valid tools in this tool shed'¶
-
default_sort_key
= 'Repository.name'¶
-
columns
= [<tool_shed.grids.repository_grids.ToolsColumn object>, <tool_shed.grids.repository_grids.RepositoryNameColumn object>, <tool_shed.grids.repository_grids.RepositoryOwnerColumn object>, <tool_shed.grids.repository_grids.ChangesetRevisionColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
class
-
class
tool_shed.grids.repository_grids.
ValidCategoryGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.CategoryGrid
-
class
RepositoriesColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Categories of Valid Repositories'¶
-
model_class
¶
-
template
= '/webapps/tool_shed/category/valid_grid.mako'¶
-
default_sort_key
= 'name'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_grids.RepositoriesColumn object>]¶
-
default_filter
= {}¶
-
global_actions
= []¶
-
operations
= []¶
-
standard_filters
= []¶
-
num_rows_per_page
= 50¶
-
use_paging
= False¶
-
class
-
class
tool_shed.grids.repository_grids.
ValidRepositoryGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryGrid
-
class
CategoryColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RepositoryCategoryColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Valid Repositories'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_grids.TypeColumn object>, <tool_shed.grids.repository_grids.InstallableRevisionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <tool_shed.grids.repository_grids.RepositoryCategoryColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= []¶
-
use_paging
= False¶
-
class
tool_shed.grids.repository_review_grids module¶
-
class
tool_shed.grids.repository_review_grids.
ComponentGrid
[source]¶ Bases:
galaxy.webapps.reports.framework.grids.Grid
-
class
NameColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
DescriptionColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Repository review components'¶
-
model_class
¶
-
template
= '/webapps/tool_shed/repository_review/grid.mako'¶
-
default_sort_key
= 'name'¶
-
use_hide_message
= False¶
-
columns
= [<tool_shed.grids.repository_review_grids.NameColumn object>, <tool_shed.grids.repository_review_grids.DescriptionColumn object>]¶
-
default_filter
= {}¶
-
global_actions
= [<galaxy.webapps.reports.framework.grids.GridAction object>]¶
-
operations
= []¶
-
standard_filters
= []¶
-
num_rows_per_page
= 50¶
-
use_paging
= False¶
-
class
-
class
tool_shed.grids.repository_review_grids.
RepositoriesWithReviewsGrid
[source]¶ Bases:
tool_shed.grids.repository_grids.RepositoryGrid
-
class
WithReviewsRevisionColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
WithoutReviewsRevisionColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
ReviewersColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RatingColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
ApprovedColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'All reviewed repositories'¶
-
model_class
¶
-
template
= '/webapps/tool_shed/repository_review/grid.mako'¶
-
default_sort_key
= 'Repository.name'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <tool_shed.grids.repository_review_grids.WithReviewsRevisionColumn object>, <tool_shed.grids.repository_review_grids.ReviewersColumn object>, <tool_shed.grids.repository_review_grids.RatingColumn object>, <tool_shed.grids.repository_review_grids.ApprovedColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
class
-
class
tool_shed.grids.repository_review_grids.
RepositoriesWithoutReviewsGrid
[source]¶ Bases:
tool_shed.grids.repository_review_grids.RepositoriesWithReviewsGrid
-
title
= 'Repositories with no reviews'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_review_grids.WithoutReviewsRevisionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
-
class
tool_shed.grids.repository_review_grids.
RepositoriesReadyForReviewGrid
[source]¶ Bases:
tool_shed.grids.repository_review_grids.RepositoriesWithoutReviewsGrid
-
title
= 'Repositories ready for review'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_review_grids.WithoutReviewsRevisionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
-
class
tool_shed.grids.repository_review_grids.
RepositoriesReviewedByMeGrid
[source]¶ Bases:
tool_shed.grids.repository_review_grids.RepositoriesWithReviewsGrid
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <tool_shed.grids.repository_review_grids.WithReviewsRevisionColumn object>, <tool_shed.grids.repository_review_grids.ReviewersColumn object>, <tool_shed.grids.repository_review_grids.RatingColumn object>, <tool_shed.grids.repository_review_grids.ApprovedColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
-
class
tool_shed.grids.repository_review_grids.
RepositoryReviewsByUserGrid
[source]¶ Bases:
galaxy.webapps.reports.framework.grids.Grid
-
class
RepositoryNameColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RepositoryDescriptionColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RevisionColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
RatingColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
title
= 'Reviews by user'¶
-
model_class
¶
-
template
= '/webapps/tool_shed/repository_review/grid.mako'¶
-
default_sort_key
= 'repository_id'¶
-
use_hide_message
= False¶
-
columns
= [<tool_shed.grids.repository_review_grids.RepositoryNameColumn object>, <tool_shed.grids.repository_review_grids.RepositoryDescriptionColumn object>, <tool_shed.grids.repository_review_grids.RevisionColumn object>, <tool_shed.grids.repository_review_grids.RatingColumn object>]¶
-
default_filter
= {}¶
-
global_actions
= []¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
standard_filters
= []¶
-
num_rows_per_page
= 50¶
-
use_paging
= False¶
-
class
-
class
tool_shed.grids.repository_review_grids.
ReviewedRepositoriesIOwnGrid
[source]¶ Bases:
tool_shed.grids.repository_review_grids.RepositoriesWithReviewsGrid
-
title
= 'Reviewed repositories I own'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_review_grids.WithReviewsRevisionColumn object>, <tool_shed.grids.repository_review_grids.WithoutReviewsRevisionColumn object>, <tool_shed.grids.repository_review_grids.ReviewersColumn object>, <tool_shed.grids.repository_grids.DeprecatedColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
-
class
tool_shed.grids.repository_review_grids.
RepositoriesWithNoToolTestsGrid
[source]¶ Bases:
tool_shed.grids.repository_review_grids.RepositoriesWithoutReviewsGrid
-
title
= 'Repositories that contain tools with no tests or test data'¶
-
columns
= [<tool_shed.grids.repository_grids.NameColumn object>, <tool_shed.grids.repository_grids.DescriptionColumn object>, <tool_shed.grids.repository_review_grids.WithoutReviewsRevisionColumn object>, <tool_shed.grids.repository_grids.UserColumn object>, <galaxy.webapps.reports.framework.grids.MulticolFilterColumn object>]¶
-
operations
= [<galaxy.webapps.reports.framework.grids.GridOperation object>]¶
-
tool_shed.grids.util module¶
-
tool_shed.grids.util.
build_approved_select_field
(trans, name, selected_value=None, for_component=True)[source]¶
-
tool_shed.grids.util.
build_changeset_revision_select_field
(trans, repository, selected_value=None, add_id_to_name=True, downloadable=False, reviewed=False, not_reviewed=False)[source]¶ Build a SelectField whose options are the changeset_rev strings of certain revisions of the received repository.
-
tool_shed.grids.util.
filter_by_latest_downloadable_changeset_revision_that_has_missing_tool_test_components
(trans, repository)[source]¶ Inspect the latest downloadable changeset revision for the received repository to see if it includes tools that are either missing functional tests or functional test data. If the changset revision includes tools but is missing tool test components, return the changeset revision hash. This will filter out repositories of type repository_suite_definition and tool_dependency_definition.
-
tool_shed.grids.util.
filter_by_latest_metadata_changeset_revision_that_has_invalid_tools
(trans, repository)[source]¶ Inspect the latest changeset revision with associated metadata for the received repository to see if it has invalid tools. This will filter out repositories of type repository_suite_definition and tool_dependency_definition.
-
tool_shed.grids.util.
get_latest_downloadable_repository_metadata
(trans, repository)[source]¶ Return the latest downloadable repository_metadata record for the received repository. This will return repositories of type unrestricted as well as types repository_suite_definition and
tool_dependency_definition.
-
tool_shed.grids.util.
get_latest_downloadable_repository_metadata_if_it_includes_tools
(trans, repository)[source]¶ Return the latest downloadable repository_metadata record for the received repository if its includes_tools attribute is True. This will filter out repositories of type repository_suite_definition and tool_dependency_definition.
-
tool_shed.grids.util.
get_latest_repository_metadata
(trans, repository)[source]¶ Return the latest repository_metadata record for the received repository if it exists. This will return repositories of type unrestricted as well as types repository_suite_definition and
tool_dependency_definition.
-
tool_shed.grids.util.
get_latest_repository_metadata_if_it_includes_invalid_tools
(trans, repository)[source]¶ Return the latest repository_metadata record for the received repository that contains invalid tools if one exists. This will filter out repositories of type repository_suite_definition and tool_dependency_definition.