Source code for galaxy.webapps.tool_shed.api.groups

import logging

from galaxy import (
    util,
    web
)
from galaxy.exceptions import (
    AdminRequiredException,
    ObjectNotFound,
    RequestParameterMissingException
)
from galaxy.util import pretty_print_time_interval
from galaxy.web import (
    _future_expose_api as expose_api,
    _future_expose_api_anonymous_and_sessionless as expose_api_anonymous_and_sessionless,
    require_admin as require_admin
)
from galaxy.web.base.controller import BaseAPIController
from tool_shed.managers import groups

log = logging.getLogger(__name__)


[docs]class GroupsController(BaseAPIController):
    """RESTful controller for interactions with groups in the Tool Shed."""

[docs]    def __init__(self, app):
        super(GroupsController, self).__init__(app)
        self.group_manager = groups.GroupManager()

    def __get_value_mapper(self, trans):
        value_mapper = {'id' : trans.security.encode_id}
        return value_mapper

[docs]    @expose_api_anonymous_and_sessionless
    def index(self, trans, deleted=False, **kwd):
        """
        GET /api/groups
        Return a list of dictionaries that contain information about each Group.

        :param deleted: flag used to include deleted groups

        Example: GET localhost:9009/api/groups
        """
        group_dicts = []
        deleted = util.asbool(deleted)
        if deleted and not trans.user_is_admin:
            raise AdminRequiredException('Only administrators can query deleted groups.')
        for group in self.group_manager.list(trans, deleted):
            group_dicts.append(self._populate(trans, group))
        return group_dicts

[docs]    @expose_api
    @require_admin
    def create(self, trans, payload, **kwd):
        """
        POST /api/groups
        Return a dictionary of information about the created group.
        The following parameters are included in the payload:

        :param name (required): the name of the group
        :param description (optional): the description of the group

        Example: POST /api/groups/?key=XXXYYYXXXYYY
        Content-Disposition: form-data; name="name" Group_Name
        Content-Disposition: form-data; name="description" Group_Description
        """
        group_dict = dict(message='', status='ok')
        name = payload.get('name', '')
        if name:
            description = payload.get('description', '')
            if not description:
                description = ''
            else:
                # TODO add description field to the model
                group_dict = self.group_manager.create(trans, name=name).to_dict(view='element', value_mapper=self.__get_value_mapper(trans))
        else:
            raise RequestParameterMissingException('Missing required parameter "name".')
        return group_dict

[docs]    @expose_api_anonymous_and_sessionless
    def show(self, trans, encoded_id, **kwd):
        """
        GET /api/groups/{encoded_group_id}
        Return a dictionary of information about a group.

        :param id: the encoded id of the Group object

        Example: GET localhost:9009/api/groups/f9cad7b01a472135
        """
        decoded_id = trans.security.decode_id(encoded_id)
        group = self.group_manager.get(trans, decoded_id)
        if group is None:
            raise ObjectNotFound('Unable to locate group record for id %s.' % (str(encoded_id)))
        return self._populate(trans, group)

    def _populate(self, trans, group):
        """
        Turn the given group information from DB into a dict
        and add other characteristics like members and repositories.
        """
        model = trans.app.model
        group_dict = group.to_dict(view='collection', value_mapper=self.__get_value_mapper(trans))
        group_members = []
        group_repos = []
        total_downloads = 0
        for uga in group.users:
            user = trans.sa_session.query(model.User).filter(model.User.table.c.id == uga.user_id).one()
            user_repos_count = 0
            for repo in trans.sa_session.query(model.Repository) \
                    .filter(model.Repository.table.c.user_id == uga.user_id) \
                    .join(model.RepositoryMetadata.table) \
                    .join(model.User.table) \
                    .outerjoin(model.RepositoryCategoryAssociation.table) \
                    .outerjoin(model.Category.table):
                categories = []
                for rca in repo.categories:
                    cat_dict = dict(name=rca.category.name, id=trans.app.security.encode_id(rca.category.id))
                    categories.append(cat_dict)
                time_repo_created_full = repo.create_time.strftime("%Y-%m-%d %I:%M %p")
                time_repo_updated_full = repo.update_time.strftime("%Y-%m-%d %I:%M %p")
                time_repo_created = pretty_print_time_interval(repo.create_time, True)
                time_repo_updated = pretty_print_time_interval(repo.update_time, True)
                approved = ''
                ratings = []
                for review in repo.reviews:
                    if review.rating:
                        ratings.append(review.rating)
                    if review.approved == 'yes':
                        approved = 'yes'
                # TODO add user ratings
                ratings_mean = str(float(sum(ratings)) / len(ratings)) if len(ratings) > 0 else ''
                total_downloads += repo.times_downloaded
                group_repos.append({'name': repo.name,
                                    'times_downloaded': repo.times_downloaded,
                                    'owner': repo.user.username,
                                    'time_created_full': time_repo_created_full,
                                    'time_created': time_repo_created,
                                    'time_updated_full': time_repo_updated_full,
                                    'time_updated': time_repo_updated,
                                    'description': repo.description,
                                    'approved': approved,
                                    'ratings_mean': ratings_mean,
                                    'categories' : categories})
                user_repos_count += 1
            encoded_user_id = trans.app.security.encode_id(repo.user.id)
            user_repos_url = web.url_for(controller='repository', action='browse_repositories_by_user', user_id=encoded_user_id)
            time_created = pretty_print_time_interval(user.create_time, True)
            member_dict = {'id': encoded_user_id, 'username': user.username, 'user_repos_url': user_repos_url, 'user_repos_count': user_repos_count, 'user_tools_count': 'unknown', 'time_created': time_created}
            group_members.append(member_dict)
        group_dict['members'] = group_members
        group_dict['total_members'] = len(group_members)
        group_dict['repositories'] = group_repos
        group_dict['total_repos'] = len(group_repos)
        group_dict['total_downloads'] = total_downloads
        return group_dict