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Source code for galaxy.tools.error_reports.plugins.biostars

"""The module describes the ``biostars`` error plugin."""
from __future__ import absolute_import

import logging

from galaxy.util import biostar
from galaxy.util import string_as_bool
from galaxy.web.base.controller import url_for
from ..plugins import ErrorPlugin

log = logging.getLogger(__name__)

[docs]class BiostarsPlugin(ErrorPlugin): """Send error report as an issue on Biostars """ plugin_type = "biostars"
[docs] def __init__(self, **kwargs): self.app = kwargs['app'] self.verbose = string_as_bool(kwargs.get('verbose', True)) self.user_submission = string_as_bool(kwargs.get('user_submission', True))
[docs] def submit_report(self, dataset, job, tool, **kwargs): """Doesn't do anything, just shows a link to submit on biostars. """ # This class specifically does nothing special for compliance purposes # because the user is willingly posting their data on a public # first/third-party site. Maybe should do something about the dialog # linking to the biostars privacy policy during the "submit to # biostars" dialog? try: assert biostar.biostar_enabled(self.app), ValueError("Biostar is not configured for this galaxy instance") assert self.app.config.biostar_enable_bug_reports, ValueError("Biostar is not configured to allow bug reporting for this galaxy instance") print(kwargs) url = url_for(controller='biostar', action='biostar_tool_bug_report', hda=self.app.security.encode_id(dataset.id), email=kwargs['email'], message=kwargs['message']) return ('Click <a href="%s">here</a> to submit to BioStars' % url, 'success') except Exception as e: return ("An error occurred submitting the report to biostars: %s" % str(e), "danger")
__all__ = ('BiostarsPlugin', )