Source code for tool_shed.test.functional.test_0110_invalid_simple_repository_dependencies

from ..base.twilltestcase import (
    common,
    ShedTwillTestCase,
)

column_maker_repository_name = "column_maker_0110"
column_maker_repository_description = "A flexible aligner."
column_maker_repository_long_description = "A flexible aligner and methylation caller for Bisulfite-Seq applications."

emboss_repository_name = "emboss_0110"
emboss_repository_description = "Galaxy wrappers for Emboss version 5.0.0 tools"
emboss_repository_long_description = "Galaxy wrappers for Emboss version 5.0.0 tools"

category_name = "Test 0110 Invalid Repository Dependencies"
category_desc = "Test 0110 Invalid Repository Dependencies"


[docs]class TestBasicRepositoryDependencies(ShedTwillTestCase):
    """Testing emboss 5 with repository dependencies."""

[docs]    def test_0000_initiate_users(self):
        """Create necessary user accounts and login as an admin user."""
        self.login(email=common.test_user_1_email, username=common.test_user_1_name)
        self.login(email=common.admin_email, username=common.admin_username)

[docs]    def test_0005_create_category(self):
        """Create a category for this test suite"""
        self.create_category(name=category_name, description=category_desc)

[docs]    def test_0010_create_emboss_datatypes_repository_and_upload_tarball(self):
        """Create and populate the emboss_datatypes repository."""
        self.login(email=common.test_user_1_email, username=common.test_user_1_name)
        category = self.populator.get_category_with_name(category_name)
        column_maker_repository = self.get_or_create_repository(
            name=column_maker_repository_name,
            description=column_maker_repository_description,
            long_description=column_maker_repository_long_description,
            owner=common.test_user_1_name,
            category=category,
            strings_displayed=[],
        )
        self.upload_file(
            column_maker_repository,
            filename="column_maker/column_maker.tar",
            filepath=None,
            valid_tools_only=True,
            uncompress_file=True,
            remove_repo_files_not_in_tar=False,
            commit_message="Uploaded column_maker tarball.",
            strings_displayed=[],
            strings_not_displayed=[],
        )

[docs]    def test_0020_create_emboss_5_repository_and_upload_files(self):
        """Create and populate the emboss_5_0110 repository."""
        category = self.populator.get_category_with_name(category_name)
        repository = self.get_or_create_repository(
            name=emboss_repository_name,
            description=emboss_repository_description,
            long_description=emboss_repository_long_description,
            owner=common.test_user_1_name,
            category=category,
            strings_displayed=[],
        )
        self.upload_file(
            repository,
            filename="emboss/emboss.tar",
            filepath=None,
            valid_tools_only=True,
            uncompress_file=True,
            remove_repo_files_not_in_tar=False,
            commit_message="Uploaded emboss tool tarball.",
            strings_displayed=[],
            strings_not_displayed=[],
        )

[docs]    def test_0025_generate_repository_dependency_with_invalid_url(self):
        """Generate a repository dependency for emboss 5 with an invalid URL."""
        dependency_path = self.generate_temp_path("test_0110", additional_paths=["simple"])
        column_maker_repository = self._get_repository_by_name_and_owner(
            column_maker_repository_name, common.test_user_1_name
        )
        emboss_repository = self._get_repository_by_name_and_owner(emboss_repository_name, common.test_user_1_name)
        url = "http://http://this is not an url!"
        name = column_maker_repository.name
        owner = column_maker_repository.owner
        changeset_revision = self.get_repository_tip(column_maker_repository)
        strings_displayed = ["Repository dependencies are currently supported only within the same tool shed"]
        repository_tuple = (url, name, owner, changeset_revision)
        self.create_repository_dependency(
            repository=emboss_repository,
            filepath=dependency_path,
            repository_tuples=[repository_tuple],
            strings_displayed=strings_displayed,
            complex=False,
        )

[docs]    def test_0030_generate_repository_dependency_with_invalid_name(self):
        """Generate a repository dependency for emboss 5 with an invalid name."""
        dependency_path = self.generate_temp_path("test_0110", additional_paths=["simple"])
        repository = self._get_repository_by_name_and_owner(column_maker_repository_name, common.test_user_1_name)
        emboss_repository = self._get_repository_by_name_and_owner(emboss_repository_name, common.test_user_1_name)
        url = self.url
        name = "!?invalid?!"
        owner = repository.owner
        changeset_revision = self.get_repository_tip(repository)
        strings_displayed = ["because the name is invalid."]
        repository_tuple = (url, name, owner, changeset_revision)
        self.create_repository_dependency(
            repository=emboss_repository,
            filepath=dependency_path,
            repository_tuples=[repository_tuple],
            strings_displayed=strings_displayed,
            complex=False,
        )

[docs]    def test_0035_generate_repository_dependency_with_invalid_owner(self):
        """Generate a repository dependency for emboss 5 with an invalid owner."""
        dependency_path = self.generate_temp_path("test_0110", additional_paths=["simple"])
        repository = self._get_repository_by_name_and_owner(column_maker_repository_name, common.test_user_1_name)
        emboss_repository = self._get_repository_by_name_and_owner(emboss_repository_name, common.test_user_1_name)
        url = self.url
        name = repository.name
        owner = "!?invalid?!"
        changeset_revision = self.get_repository_tip(repository)
        strings_displayed = ["because the owner is invalid."]
        repository_tuple = (url, name, owner, changeset_revision)
        self.create_repository_dependency(
            repository=emboss_repository,
            filepath=dependency_path,
            repository_tuples=[repository_tuple],
            strings_displayed=strings_displayed,
            complex=False,
        )

[docs]    def test_0040_generate_repository_dependency_with_invalid_changeset_revision(self):
        """Generate a repository dependency for emboss 5 with an invalid changeset revision."""
        dependency_path = self.generate_temp_path("test_0110", additional_paths=["simple", "invalid"])
        repository = self._get_repository_by_name_and_owner(column_maker_repository_name, common.test_user_1_name)
        emboss_repository = self._get_repository_by_name_and_owner(emboss_repository_name, common.test_user_1_name)
        url = self.url
        name = repository.name
        owner = repository.owner
        changeset_revision = "!?invalid?!"
        strings_displayed = ["because the changeset revision is invalid."]
        repository_tuple = (url, name, owner, changeset_revision)
        self.create_repository_dependency(
            repository=emboss_repository,
            filepath=dependency_path,
            repository_tuples=[repository_tuple],
            strings_displayed=strings_displayed,
            complex=False,
        )