Source code for galaxy.job_metrics.instrumenters.cpuinfo

"""The module describes the ``cpuinfo`` job metrics plugin."""
import logging
import re
from typing import Any

from galaxy import util
from . import InstrumentPlugin
from ..formatting import (
    FormattedMetric,
    JobMetricFormatter,
)

log = logging.getLogger(__name__)

PROCESSOR_LINE = re.compile(r"processor\s*\:\s*(\d+)")


class CpuInfoFormatter(JobMetricFormatter):
    def format(self, key: str, value: Any) -> FormattedMetric:
        if key == "processor_count":
            return FormattedMetric("Processor Count", f"{int(value)}")
        else:
            return super().format(key, value)


[docs]class CpuInfoPlugin(InstrumentPlugin):
    """Gather information about processor configuration from /proc/cpuinfo.
    Linux only.
    """

    plugin_type = "cpuinfo"
    formatter = CpuInfoFormatter()

[docs]    def __init__(self, **kwargs):
        self.verbose = util.asbool(kwargs.get("verbose", False))

[docs]    def pre_execute_instrument(self, job_directory):
        return f"cat /proc/cpuinfo > '{self.__instrument_cpuinfo_path(job_directory)}'"

[docs]    def job_properties(self, job_id, job_directory):
        properties = {}
        processor_count = 0
        with open(self.__instrument_cpuinfo_path(job_directory)) as f:
            current_processor = None
            for line in f:
                line = line.strip().lower()
                if not line:  # Skip empty lines
                    continue

                processor_line_match = PROCESSOR_LINE.match(line)
                if processor_line_match:
                    processor_count += 1
                    current_processor = processor_line_match.group(1)
                elif current_processor and self.verbose:
                    # If verbose, dump information about each processor
                    # into database...
                    key, value = line.split(":", 1)
                    key = f"processor_{current_processor}_{key.strip()}"
                    value = value
        properties["processor_count"] = processor_count
        return properties

    def __instrument_cpuinfo_path(self, job_directory):
        return self._instrument_file_path(job_directory, "cpuinfo")


__all__ = ("CpuInfoPlugin",)