Source code for tool_shed.test.functional.test_1160_tool_help_images

import logging

from ..base.twilltestcase import common, ShedTwillTestCase

log = logging.getLogger(__name__)

repository_name = 'htseq_count_0140'
repository_description = "Converter: BED to GFF"
repository_long_description = "Convert bed to gff"

category_name = 'Test 0140 Tool Help Images'
category_description = 'Test 0140 Tool Help Images'

# 1) Create and populate the htseq_count_0140 repository.
# 2) Visit the manage_repository page, then the tool page, and look for the image string
# similar to the following string where the encoded repository_id is previously determined:
# src="/repository/static/images/<id>/count_modes.png"


[docs]class TestToolHelpImages(ShedTwillTestCase):
    '''Test features related to tool help images.'''

[docs]    def test_0000_initiate_users(self):
        """Create necessary user accounts."""
        self.login(email=common.test_user_1_email, username=common.test_user_1_name)
        test_user_1 = self.test_db_util.get_user(common.test_user_1_email)
        assert test_user_1 is not None, f'Problem retrieving user with email {common.test_user_1_email} from the database'
        self.test_db_util.get_private_role(test_user_1)
        self.login(email=common.admin_email, username=common.admin_username)
        admin_user = self.test_db_util.get_user(common.admin_email)
        assert admin_user is not None, f'Problem retrieving user with email {common.admin_email} from the database'
        self.test_db_util.get_private_role(admin_user)

[docs]    def test_0005_create_htseq_count_repository(self):
        '''Create and populate htseq_count_0140.'''
        '''
        We are at step 1 - Create and populate the htseq_count_0140 repository.
        Create the htseq_count_0140 repository and upload the tarball.
        '''
        category = self.create_category(name=category_name, description=category_description)
        self.login(email=common.test_user_1_email, username=common.test_user_1_name)
        # Create a repository named htseq_count_0140 owned by user1.
        repository = self.get_or_create_repository(name=repository_name,
                                                   description=repository_description,
                                                   long_description=repository_long_description,
                                                   owner=common.test_user_1_name,
                                                   category_id=self.security.encode_id(category.id),
                                                   strings_displayed=[])
        if self.repository_is_new(repository):
            # Upload htseq_count.tar to the repository if it hasn't already been populated.
            self.upload_file(repository,
                             filename='htseq_count/htseq_count.tar',
                             filepath=None,
                             valid_tools_only=True,
                             uncompress_file=False,
                             remove_repo_files_not_in_tar=False,
                             commit_message='Uploaded htseq_count.tar.',
                             strings_displayed=[],
                             strings_not_displayed=[])

[docs]    def test_0010_load_tool_page(self):
        '''Load the tool page and check for the image URL.'''
        '''
        This is a duplicate of test method _0010 in test_0140_tool_help_images.
        '''
        repository = self.test_db_util.get_repository_by_name_and_owner(repository_name, common.test_user_1_name)
        # Get the repository tip.
        changeset_revision = self.get_repository_tip(repository)
        self.display_manage_repository_page(repository)
        # Generate the image path.
        image_path = f'src="/repository/static/images/{self.security.encode_id(repository.id)}/count_modes.png"'
        # The repository uploaded in this test should only have one metadata revision, with one tool defined, which
        # should be the tool that contains a link to the image.
        repository_metadata = repository.metadata_revisions[0].metadata
        tool_path = repository_metadata['tools'][0]['tool_config']
        self.load_display_tool_page(repository, tool_path, changeset_revision, strings_displayed=[image_path], strings_not_displayed=[])