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Source code for galaxy.util.pastescript.loadwsgi
# (c) 2005 Ian Bicking and contributors; written for Paste (http://pythonpaste.org)
# Licensed under the MIT license: http://www.opensource.org/licenses/mit-license.php
# Mostly taken from PasteDeploy and stripped down for Galaxy
import inspect
import os
import re
import sys
from typing import Callable, Dict, List, Optional, Union
from urllib.parse import unquote
import pkg_resources
from galaxy.util.getargspec import getfullargspec
from galaxy.util.properties import NicerConfigParser
__all__ = ('loadapp', 'loadserver', 'loadfilter', 'appconfig')
# ---- from paste.deploy.compat --------------------------------------
"""Python 2<->3 compatibility module"""
def print_(template, *args, **kwargs):
template = str(template)
if args:
template = template % args
elif kwargs:
template = template % kwargs
sys.stdout.writelines(template)
def reraise(t, e, tb):
exec('raise e from tb', dict(e=e, tb=tb))
# ---- from paste.deploy.util ----------------------------------------
def fix_type_error(exc_info, callable, varargs, kwargs):
"""
Given an exception, this will test if the exception was due to a
signature error, and annotate the error with better information if
so.
Usage::
try:
val = callable(*args, **kw)
except TypeError:
exc_info = fix_type_error(None, callable, args, kw)
raise exc_info[0], exc_info[1], exc_info[2]
"""
if exc_info is None:
exc_info = sys.exc_info()
if (exc_info[0] != TypeError
or str(exc_info[1]).find('argument') == -1
or getattr(exc_info[1], '_type_error_fixed', False)):
return exc_info
exc_info[1]._type_error_fixed = True
argspec = inspect.formatargspec(*getfullargspec(callable))
args = ', '.join(map(_short_repr, varargs))
if kwargs and args:
args += ', '
if kwargs:
kwargs = sorted(kwargs.keys())
args += ', '.join('%s=...' % n for n in kwargs)
gotspec = '(%s)' % args
msg = '{}; got {}, wanted {}'.format(exc_info[1], gotspec, argspec)
exc_info[1].args = (msg,)
return exc_info
def _short_repr(v):
v = repr(v)
if len(v) > 12:
v = v[:8] + '...' + v[-4:]
return v
def fix_call(callable, *args, **kw):
"""
Call ``callable(*args, **kw)`` fixing any type errors that come out.
"""
try:
val = callable(*args, **kw)
except TypeError:
exc_info = fix_type_error(None, callable, args, kw)
reraise(*exc_info)
return val
def lookup_object(spec):
"""
Looks up a module or object from a some.module:func_name specification.
To just look up a module, omit the colon and everything after it.
"""
parts, target = spec.split(':') if ':' in spec else (spec, None)
module = __import__(parts)
for part in parts.split('.')[1:] + ([target] if target else []):
module = getattr(module, part)
return module
# ---- from paste.deploy.loadwsgi ------------------------------------
############################################################
# Utility functions
############################################################
def import_string(s):
return pkg_resources.EntryPoint.parse("x=" + s).load(False)
def _aslist(obj):
"""
Turn object into a list; lists and tuples are left as-is, None
becomes [], and everything else turns into a one-element list.
"""
if obj is None:
return []
elif isinstance(obj, (list, tuple)):
return obj
else:
return [obj]
def _flatten(lst):
"""
Flatten a nested list.
"""
if not isinstance(lst, (list, tuple)):
return [lst]
result = []
for item in lst:
result.extend(_flatten(item))
return result
############################################################
# Object types
############################################################
class _ObjectType:
name: Optional[str] = None
egg_protocols: Optional[List[Union[str, List[str]]]] = None
config_prefixes: Optional[List[Union[List[str], str]]] = None
def __init__(self):
# Normalize these variables:
self.egg_protocols = [_aslist(p) for p in _aslist(self.egg_protocols)]
self.config_prefixes = [_aslist(p) for p in _aslist(self.config_prefixes)]
def __repr__(self):
return '<{} protocols={!r} prefixes={!r}>'.format(
self.name, self.egg_protocols, self.config_prefixes)
def invoke(self, context):
assert context.protocol in _flatten(self.egg_protocols)
return fix_call(context.object,
context.global_conf, **context.local_conf)
class _App(_ObjectType):
name = 'application'
egg_protocols = ['paste.app_factory', 'paste.composite_factory',
'paste.composit_factory']
config_prefixes = [['app', 'application'], ['composite', 'composit'],
'pipeline', 'filter-app']
def invoke(self, context):
if context.protocol in ('paste.composit_factory',
'paste.composite_factory'):
return fix_call(context.object,
context.loader, context.global_conf,
**context.local_conf)
elif context.protocol == 'paste.app_factory':
return fix_call(context.object, context.global_conf, **context.local_conf)
else:
assert 0, "Protocol %r unknown" % context.protocol
APP = _App()
class _Filter(_ObjectType):
name = 'filter'
egg_protocols = [['paste.filter_factory', 'paste.filter_app_factory']]
config_prefixes = ['filter']
def invoke(self, context):
if context.protocol == 'paste.filter_factory':
return fix_call(context.object,
context.global_conf, **context.local_conf)
elif context.protocol == 'paste.filter_app_factory':
def filter_wrapper(wsgi_app):
# This should be an object, so it has a nicer __repr__
return fix_call(context.object,
wsgi_app, context.global_conf,
**context.local_conf)
return filter_wrapper
else:
assert 0, "Protocol %r unknown" % context.protocol
FILTER = _Filter()
class _Server(_ObjectType):
name = 'server'
egg_protocols = [['paste.server_factory', 'paste.server_runner']]
config_prefixes = ['server']
def invoke(self, context):
if context.protocol == 'paste.server_factory':
return fix_call(context.object,
context.global_conf, **context.local_conf)
elif context.protocol == 'paste.server_runner':
def server_wrapper(wsgi_app):
# This should be an object, so it has a nicer __repr__
return fix_call(context.object,
wsgi_app, context.global_conf,
**context.local_conf)
return server_wrapper
else:
assert 0, "Protocol %r unknown" % context.protocol
SERVER = _Server()
# Virtual type: (@@: There's clearly something crufty here;
# this probably could be more elegant)
class _PipeLine(_ObjectType):
name = 'pipeline'
def invoke(self, context):
app = context.app_context.create()
filters = [c.create() for c in context.filter_contexts]
filters.reverse()
for filter_ in filters:
app = filter_(app)
return app
PIPELINE = _PipeLine()
class _FilterApp(_ObjectType):
name = 'filter_app'
def invoke(self, context):
next_app = context.next_context.create()
filter_ = context.filter_context.create()
return filter_(next_app)
FILTER_APP = _FilterApp()
class _FilterWith(_App):
name = 'filtered_with'
def invoke(self, context):
filter_ = context.filter_context.create()
filtered = context.next_context.create()
if context.next_context.object_type is APP:
return filter_(filtered)
else:
# filtering a filter
def composed(app):
return filter_(filtered(app))
return composed
FILTER_WITH = _FilterWith()
############################################################
# Loaders
############################################################
[docs]def appconfig(uri, name=None, relative_to=None, global_conf=None):
context = loadcontext(APP, uri, name=name,
relative_to=relative_to,
global_conf=global_conf)
return context.config()
_loaders: Dict[str, Callable] = {}
def loadobj(object_type, uri, name=None, relative_to=None,
global_conf=None):
context = loadcontext(
object_type, uri, name=name, relative_to=relative_to,
global_conf=global_conf)
return context.create()
def loadcontext(object_type, uri, name=None, relative_to=None,
global_conf=None):
if '#' in uri:
if name is None:
uri, name = uri.split('#', 1)
else:
# @@: Ignore fragment or error?
uri = uri.split('#', 1)[0]
if name is None:
name = 'main'
if ':' not in uri:
raise LookupError("URI has no scheme: %r" % uri)
scheme, path = uri.split(':', 1)
scheme = scheme.lower()
if scheme not in _loaders:
raise LookupError(
"URI scheme not known: %r (from %s)"
% (scheme, ', '.join(_loaders.keys())))
return _loaders[scheme](
object_type,
uri, path, name=name, relative_to=relative_to,
global_conf=global_conf)
def _loadconfig(object_type, uri, path, name, relative_to,
global_conf):
isabs = os.path.isabs(path)
# De-Windowsify the paths:
path = path.replace('\\', '/')
if not isabs:
if not relative_to:
raise ValueError(
"Cannot resolve relative uri %r; no relative_to keyword "
"argument given" % uri)
relative_to = relative_to.replace('\\', '/')
if relative_to.endswith('/'):
path = relative_to + path
else:
path = relative_to + '/' + path
if path.startswith('///'):
path = path[2:]
path = unquote(path)
loader = ConfigLoader(path)
if global_conf:
loader.update_defaults(global_conf, overwrite=False)
return loader.get_context(object_type, name, global_conf)
_loaders['config'] = _loadconfig
def _loadegg(object_type, uri, spec, name, relative_to,
global_conf):
loader = EggLoader(spec)
return loader.get_context(object_type, name, global_conf)
_loaders['egg'] = _loadegg
def _loadfunc(object_type, uri, spec, name, relative_to,
global_conf):
loader = FuncLoader(spec)
return loader.get_context(object_type, name, global_conf)
_loaders['call'] = _loadfunc
############################################################
# Loaders
############################################################
class _Loader:
def get_app(self, name=None, global_conf=None):
return self.app_context(
name=name, global_conf=global_conf).create()
def get_filter(self, name=None, global_conf=None):
return self.filter_context(
name=name, global_conf=global_conf).create()
def get_server(self, name=None, global_conf=None):
return self.server_context(
name=name, global_conf=global_conf).create()
def app_context(self, name=None, global_conf=None):
return self.get_context(
APP, name=name, global_conf=global_conf)
def filter_context(self, name=None, global_conf=None):
return self.get_context(
FILTER, name=name, global_conf=global_conf)
def server_context(self, name=None, global_conf=None):
return self.get_context(
SERVER, name=name, global_conf=global_conf)
_absolute_re = re.compile(r'^[a-zA-Z]+:')
def absolute_name(self, name):
"""
Returns true if the name includes a scheme
"""
if name is None:
return False
return self._absolute_re.search(name)
class ConfigLoader(_Loader):
def __init__(self, filename):
self.filename = filename = filename.strip()
defaults = {
'here': os.path.dirname(os.path.abspath(filename)),
'__file__': os.path.abspath(filename)
}
self.parser = NicerConfigParser(filename, defaults=defaults)
self.parser.optionxform = str # Don't lower-case keys
with open(filename) as f:
self.parser.read_file(f)
def update_defaults(self, new_defaults, overwrite=True):
for key, value in new_defaults.items():
if not overwrite and key in self.parser._defaults:
continue
self.parser._defaults[key] = value
def get_context(self, object_type, name=None, global_conf=None):
if self.absolute_name(name):
return loadcontext(object_type, name,
relative_to=os.path.dirname(self.filename),
global_conf=global_conf)
section = self.find_config_section(
object_type, name=name)
if global_conf is None:
global_conf = {}
else:
global_conf = global_conf.copy()
defaults = self.parser.defaults()
global_conf.update(defaults)
local_conf = {}
global_additions = {}
get_from_globals = {}
for option in self.parser.options(section):
if option.startswith('set '):
name = option[4:].strip()
global_additions[name] = global_conf[name] = (
self.parser.get(section, option))
elif option.startswith('get '):
name = option[4:].strip()
get_from_globals[name] = self.parser.get(section, option)
else:
if option in defaults:
# @@: It's a global option (?), so skip it
continue
local_conf[option] = self.parser.get(section, option)
for local_var, glob_var in get_from_globals.items():
local_conf[local_var] = global_conf[glob_var]
if object_type in (APP, FILTER) and 'filter-with' in local_conf:
filter_with = local_conf.pop('filter-with')
else:
filter_with = None
if 'require' in local_conf:
for spec in local_conf['require'].split():
pkg_resources.require(spec)
del local_conf['require']
if section.startswith('filter-app:'):
context = self._filter_app_context(
object_type, section, name=name,
global_conf=global_conf, local_conf=local_conf,
global_additions=global_additions)
elif section.startswith('pipeline:'):
context = self._pipeline_app_context(
object_type, section, name=name,
global_conf=global_conf, local_conf=local_conf,
global_additions=global_additions)
elif 'use' in local_conf:
context = self._context_from_use(
object_type, local_conf, global_conf, global_additions,
section)
else:
context = self._context_from_explicit(
object_type, local_conf, global_conf, global_additions,
section)
if filter_with is not None:
filter_with_context = LoaderContext(
obj=None,
object_type=FILTER_WITH,
protocol=None,
global_conf=global_conf, local_conf=local_conf,
loader=self)
filter_with_context.filter_context = self.filter_context(
name=filter_with, global_conf=global_conf)
filter_with_context.next_context = context
return filter_with_context
return context
def _context_from_use(self, object_type, local_conf, global_conf,
global_additions, section):
use = local_conf.pop('use')
context = self.get_context(
object_type, name=use, global_conf=global_conf)
context.global_conf.update(global_additions)
context.local_conf.update(local_conf)
if '__file__' in global_conf:
# use sections shouldn't overwrite the original __file__
context.global_conf['__file__'] = global_conf['__file__']
# @@: Should loader be overwritten?
context.loader = self
if context.protocol is None:
# Determine protocol from section type
section_protocol = section.split(':', 1)[0]
if section_protocol in ('application', 'app'):
context.protocol = 'paste.app_factory'
elif section_protocol in ('composit', 'composite'):
context.protocol = 'paste.composit_factory'
else:
# This will work with 'server' and 'filter', otherwise it
# could fail but there is an error message already for
# bad protocols
context.protocol = 'paste.%s_factory' % section_protocol
return context
def _context_from_explicit(self, object_type, local_conf, global_conf,
global_addition, section):
possible = []
for protocol_options in object_type.egg_protocols:
for protocol in protocol_options:
if protocol in local_conf:
possible.append((protocol, local_conf[protocol]))
break
if len(possible) > 1:
raise LookupError(
"Multiple protocols given in section %r: %s"
% (section, possible))
if not possible:
raise LookupError(
"No loader given in section %r" % section)
found_protocol, found_expr = possible[0]
del local_conf[found_protocol]
value = import_string(found_expr)
context = LoaderContext(
value, object_type, found_protocol,
global_conf, local_conf, self)
return context
def _filter_app_context(self, object_type, section, name,
global_conf, local_conf, global_additions):
if 'next' not in local_conf:
raise LookupError(
"The [%s] section in %s is missing a 'next' setting"
% (section, self.filename))
next_name = local_conf.pop('next')
context = LoaderContext(None, FILTER_APP, None, global_conf,
local_conf, self)
context.next_context = self.get_context(
APP, next_name, global_conf)
if 'use' in local_conf:
context.filter_context = self._context_from_use(
FILTER, local_conf, global_conf, global_additions,
section)
else:
context.filter_context = self._context_from_explicit(
FILTER, local_conf, global_conf, global_additions,
section)
return context
def _pipeline_app_context(self, object_type, section, name,
global_conf, local_conf, global_additions):
if 'pipeline' not in local_conf:
raise LookupError(
"The [%s] section in %s is missing a 'pipeline' setting"
% (section, self.filename))
pipeline = local_conf.pop('pipeline').split()
if local_conf:
raise LookupError(
"The [%s] pipeline section in %s has extra "
"(disallowed) settings: %s"
% (', '.join(local_conf.keys())))
context = LoaderContext(None, PIPELINE, None, global_conf,
local_conf, self)
context.app_context = self.get_context(
APP, pipeline[-1], global_conf)
context.filter_contexts = [
self.get_context(FILTER, pname, global_conf)
for pname in pipeline[:-1]]
return context
def find_config_section(self, object_type, name=None):
"""
Return the section name with the given name prefix (following the
same pattern as ``protocol_desc`` in ``config``. It must have the
given name, or for ``'main'`` an empty name is allowed. The
prefix must be followed by a ``:``.
Case is *not* ignored.
"""
possible = []
for name_options in object_type.config_prefixes:
for name_prefix in name_options:
found = self._find_sections(
self.parser.sections(), name_prefix, name)
if found:
possible.extend(found)
break
if not possible:
raise LookupError(
"No section %r (prefixed by %s) found in config %s"
% (name,
' or '.join(map(repr, _flatten(object_type.config_prefixes))),
self.filename))
if len(possible) > 1:
raise LookupError(
"Ambiguous section names %r for section %r (prefixed by %s) "
"found in config %s"
% (possible, name,
' or '.join(map(repr, _flatten(object_type.config_prefixes))),
self.filename))
return possible[0]
def _find_sections(self, sections, name_prefix, name):
found = []
if name is None:
if name_prefix in sections:
found.append(name_prefix)
name = 'main'
for section in sections:
if section.startswith(name_prefix + ':'):
if section[len(name_prefix) + 1:].strip() == name:
found.append(section)
return found
class EggLoader(_Loader):
def __init__(self, spec):
self.spec = spec
def get_context(self, object_type, name=None, global_conf=None):
if self.absolute_name(name):
return loadcontext(object_type, name,
global_conf=global_conf)
entry_point, protocol, ep_name = self.find_egg_entry_point(
object_type, name=name)
return LoaderContext(
entry_point,
object_type,
protocol,
global_conf or {}, {},
self,
distribution=pkg_resources.get_distribution(self.spec),
entry_point_name=ep_name)
def find_egg_entry_point(self, object_type, name=None):
"""
Returns the (entry_point, protocol) for the with the given
``name``.
"""
if name is None:
name = 'main'
possible = []
for protocol_options in object_type.egg_protocols:
for protocol in protocol_options:
pkg_resources.require(self.spec)
entry = pkg_resources.get_entry_info(
self.spec,
protocol,
name)
if entry is not None:
possible.append((entry.load(), protocol, entry.name))
break
if not possible:
# Better exception
dist = pkg_resources.get_distribution(self.spec)
raise LookupError(
"Entry point %r not found in egg %r (dir: %s; protocols: %s; "
"entry_points: %s)"
% (name, self.spec,
dist.location,
', '.join(_flatten(object_type.egg_protocols)),
', '.join(_flatten([
list((pkg_resources.get_entry_info(self.spec, prot, name) or {}).keys())
for prot in protocol_options] or '(no entry points)'))))
if len(possible) > 1:
raise LookupError(
"Ambiguous entry points for %r in egg %r (protocols: %s)"
% (name, self.spec, ', '.join(_flatten(protocol_options))))
return possible[0]
class FuncLoader(_Loader):
""" Loader that supports specifying functions inside modules, without
using eggs at all. Configuration should be in the format:
use = call:my.module.path:function_name
Dot notation is supported in both the module and function name, e.g.:
use = call:my.module.path:object.method
"""
def __init__(self, spec):
self.spec = spec
if ':' not in spec:
raise LookupError("Configuration not in format module:function")
def get_context(self, object_type, name=None, global_conf=None):
obj = lookup_object(self.spec)
return LoaderContext(
obj,
object_type,
None, # determine protocol from section type
global_conf or {},
{},
self,
)
class LoaderContext:
def __init__(self, obj, object_type, protocol,
global_conf, local_conf, loader,
distribution=None, entry_point_name=None):
self.object = obj
self.object_type = object_type
self.protocol = protocol
# assert protocol in _flatten(object_type.egg_protocols), (
# "Bad protocol %r; should be one of %s"
# % (protocol, ', '.join(map(repr, _flatten(object_type.egg_protocols)))))
self.global_conf = global_conf
self.local_conf = local_conf
self.loader = loader
self.distribution = distribution
self.entry_point_name = entry_point_name
def create(self):
return self.object_type.invoke(self)
def config(self):
conf = AttrDict(self.global_conf)
conf.update(self.local_conf)
conf.local_conf = self.local_conf
conf.global_conf = self.global_conf
conf.context = self
return conf
class AttrDict(dict):
"""
A dictionary that can be assigned to.
"""