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galaxy.config package¶
Universe configuration builder.
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galaxy.config.
LOGGING_CONFIG_DEFAULT
= {'disable_existing_loggers': False, 'filters': {'stack': {'()': 'galaxy.web_stack.application_stack_log_filter'}}, 'formatters': {'stack': {'()': 'galaxy.web_stack.application_stack_log_formatter'}}, 'handlers': {'console': {'class': 'logging.StreamHandler', 'formatter': 'stack', 'level': 'DEBUG', 'stream': 'ext://sys.stderr', 'filters': ['stack']}}, 'loggers': {'paste.httpserver.ThreadPool': {'level': 'WARN', 'qualname': 'paste.httpserver.ThreadPool'}, 'routes.middleware': {'level': 'WARN', 'qualname': 'routes.middleware'}, 'amqp': {'level': 'INFO', 'qualname': 'amqp'}, 'dogpile': {'level': 'WARN', 'qualname': 'dogpile'}}, 'root': {'handlers': ['console'], 'level': 'DEBUG'}, 'version': 1}¶ Default value for logging configuration, passed to
logging.config.dictConfig()
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class
galaxy.config.
CommonConfigurationMixin
[source]¶ Bases:
object
Shared configuration settings code for Galaxy and ToolShed.
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admin_users
¶
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sentry_dsn_public
¶ Sentry URL with private key removed for use in client side scripts, sentry server will need to be configured to accept events
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class
galaxy.config.
GalaxyAppConfiguration
(**kwargs)[source]¶ Bases:
galaxy.config.BaseAppConfiguration
,galaxy.config.CommonConfigurationMixin
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deprecated_options
= ('database_file', 'track_jobs_in_database')¶
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default_config_file_name
= 'galaxy.yml'¶
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deprecated_dirs
= {'config_dir': 'config', 'data_dir': 'database'}¶
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galaxy.config.
Configuration
¶ alias of
galaxy.config.GalaxyAppConfiguration
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galaxy.config.
reload_config_options
(current_config)[source]¶ Reload modified reloadable config options.
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galaxy.config.
get_database_engine_options
(kwargs, model_prefix='')[source]¶ Allow options for the SQLAlchemy database engine to be passed by using the prefix “database_engine_option”.
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galaxy.config.
init_models_from_config
(config, map_install_models=False, object_store=None, trace_logger=None)[source]¶
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galaxy.config.
configure_logging
(config)[source]¶ Allow some basic logging configuration to be read from ini file.
This should be able to consume either a galaxy.config.Configuration object or a simple dictionary of configuration variables.
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class
galaxy.config.
ConfiguresGalaxyMixin
[source]¶ Bases:
object
Shared code for configuring Galaxy-like app objects.
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tool_dependency_dir
¶
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Submodules¶
galaxy.config.config_manage module¶
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class
galaxy.config.config_manage.
App
(config_paths, default_port, expected_app_factories, destination, schema_path, uwsgi_module)¶ Bases:
tuple
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app_name
¶
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config_paths
¶ Alias for field number 0
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default_port
¶ Alias for field number 1
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destination
¶ Alias for field number 3
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expected_app_factories
¶ Alias for field number 2
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sample_destination
¶
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schema
¶
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schema_path
¶ Alias for field number 4
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uwsgi_module
¶ Alias for field number 5
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class
galaxy.config.config_manage.
OptionValue
(name, value, option)¶ Bases:
tuple
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name
¶ Alias for field number 0
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option
¶ Alias for field number 2
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value
¶ Alias for field number 1
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