This document is for an in-development version of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

Source code for tool_shed.webapp.model.migrate.versions.0014_add_deprecated_column

Migration script to add the deprecated column to the repository table.
from __future__ import print_function

import logging
import sys

from sqlalchemy import Boolean, Column, MetaData, Table

log = logging.getLogger(__name__)
handler = logging.StreamHandler(sys.stdout)
format = "%(name)s %(levelname)s %(asctime)s %(message)s"
formatter = logging.Formatter(format)

metadata = MetaData()

[docs]def upgrade(migrate_engine): print(__doc__) metadata.bind = migrate_engine metadata.reflect() # Create and initialize imported column in job table. Repository_table = Table("repository", metadata, autoload=True) c = Column("deprecated", Boolean, default=False) try: # Create c.create(Repository_table) assert c is Repository_table.c.deprecated # Initialize. if migrate_engine.name == 'mysql' or migrate_engine.name == 'sqlite': default_false = "0" elif migrate_engine.name in ['postgresql', 'postgres']: default_false = "false" migrate_engine.execute("UPDATE repository SET deprecated=%s" % default_false) except Exception: log.exception("Adding deprecated column to the repository table failed.")
[docs]def downgrade(migrate_engine): metadata.bind = migrate_engine metadata.reflect() # Drop email_alerts column from repository table. Repository_table = Table("repository", metadata, autoload=True) try: Repository_table.c.deprecated.drop() except Exception: log.exception("Dropping column deprecated from the repository table failed.")