Warning

This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

galaxy.files package

class galaxy.files.FileSourcePath(file_source, path)

Bases: tuple

property file_source

Alias for field number 0

property path

Alias for field number 1

class galaxy.files.ConfiguredFileSources(file_sources_config, conf_file=None, conf_dict=None, load_stock_plugins=False)[source]

Bases: object

Load plugins and resolve Galaxy URIs to FileSource objects.

__init__(file_sources_config, conf_file=None, conf_dict=None, load_stock_plugins=False)[source]

Initialize self. See help(type(self)) for accurate signature.

get_file_source_path(uri)[source]

Parse uri into a FileSource object and a path relative to its base.

validate_uri_root(uri, user_context)[source]
get_file_source(id_prefix, scheme)[source]
looks_like_uri(path_or_uri)[source]
get_schemes()[source]
plugins_to_dict(for_serialization=False, user_context=None)[source]
to_dict(for_serialization=False, user_context=None)[source]
static from_app_config(config)[source]
static from_dict(as_dict)[source]
class galaxy.files.ConfiguredFileSourcesConfig(symlink_allowlist=None, library_import_dir=None, user_library_import_dir=None, ftp_upload_dir=None, ftp_upload_purge=True)[source]

Bases: object

__init__(symlink_allowlist=None, library_import_dir=None, user_library_import_dir=None, ftp_upload_dir=None, ftp_upload_purge=True)[source]

Initialize self. See help(type(self)) for accurate signature.

static from_app_config(config)[source]
to_dict()[source]
static from_dict(as_dict)[source]
class galaxy.files.ProvidesUserFileSourcesUserContext(trans)[source]

Bases: object

Implement a FileSourcesUserContext from a Galaxy ProvidesUserContext (e.g. trans).

__init__(trans)[source]

Initialize self. See help(type(self)) for accurate signature.

property email
property username
property ftp_dir
property preferences
property role_names

The set of role names of this user.

property group_names

The set of group names to which this user belongs.

property is_admin

Whether this user is an administrator.

class galaxy.files.DictFileSourcesUserContext(**kwd)[source]

Bases: object

__init__(**kwd)[source]

Initialize self. See help(type(self)) for accurate signature.

property email
property username
property ftp_dir
property preferences
property role_names
property group_names
property is_admin