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Source code for galaxy.util.renamed_temporary_file
"""Safely write file to temporary file and then move file into place.""" # Copied from https://stackoverflow.com/a/12007885. import os import tempfile[docs]class RenamedTemporaryFile: """ A temporary file object which will be renamed to the specified path on exit. """[docs] def __init__(self, final_path, **kwargs): """ >>> dir = tempfile.mkdtemp() >>> with RenamedTemporaryFile(os.path.join(dir, 'test.txt'), mode="w") as out: ... _ = out.write('bla') """ tmpfile_dir = kwargs.pop('dir', None) # Put temporary file in the same directory as the location for the # final file so that an atomic move into place can occur. if tmpfile_dir is None: tmpfile_dir = os.path.dirname(final_path) self.tmpfile = tempfile.NamedTemporaryFile(dir=tmpfile_dir, delete=False, **kwargs) self.final_path = final_pathdef __getattr__(self, attr): """ Delegate attribute access to the underlying temporary file object. """ return getattr(self.tmpfile, attr) def __enter__(self): self.tmpfile.__enter__() return self def __exit__(self, exc_type, exc_val, exc_tb): if exc_type is None: self.tmpfile.flush() result = self.tmpfile.__exit__(exc_type, exc_val, exc_tb) os.rename(self.tmpfile.name, self.final_path) else: result = self.tmpfile.__exit__(exc_type, exc_val, exc_tb) return result