=========================================================== January 2020 Galaxy Release (v 20.01) =========================================================== .. include:: _header.rst Highlights =========================================================== **Workflow Executions Menu** This menu can be reached from the User menu -> Workflow Invocations and lists your recent Workflow executions, their status and links to the Workflow Editor and the History with the results of the Workflow run. .. figure:: https://user-images.githubusercontent.com/216771/65520097-0a041f80-deb5-11e9-80ac-2557b36c252f.png :alt: Workflow invocation menu :width: 400px .. figure:: https://user-images.githubusercontent.com/6804901/73737075-345ac900-4742-11ea-9f50-0f0e4c3d9271.png :alt: Workflow invocatios **Galay Markdown Pages and Workflow Reports as PDF** An additional link has been added to Galaxy Markdown Pages and Workflow reports that exports your document as a standalone PDF. .. figure:: https://user-images.githubusercontent.com/6804901/73776256-b7524280-4787-11ea-821f-d9a8c6339ee9.png :alt: Example PDF export **Screenreader-friendly Navigation** The top menu and the Workflow Editor have been improved for easier navigation using Screenreaders and the Keyboard. Thanks goes to `@WilliamHolden `__ **Email-notification for completed jobs** You can now select to be notified by email when a tool run has finished. Thanks goes to `@astrovsky01 `__ .. figure:: https://user-images.githubusercontent.com/6804901/73779180-a2c47900-478c-11ea-98ab-7355276b6f6d.png :alt: Example of email button :width: 300px New Visualizations =========================================================== .. visualizations * Add data dialog input element to client form parameter list `Pull Request 8774`_ * Wrap SQL statement in a text() function as required by sqlalchemy (thanks to `@kaukrise `__). `Pull Request 9216`_ * Ensure visible overflow on navbar container (thanks to `@kaukrise `__). `Pull Request 9217`_ New Datatypes =========================================================== .. datatypes * Datatypes for MassSpec DIA dlib,elib (thanks to `@jj-umn `__). `Pull Request 8657`_ * Add bus as binary, remove extra datatype (thanks to `@astrovsky01 `__). `Pull Request 8705`_ * remove dada2_derep data type (thanks to `@bernt-matthias `__). `Pull Request 8902`_ * Add new GROMACS datatypes: ndx, xvg, edr (thanks to `@simonbray `__). `Pull Request 8964`_ * add gff3.gz and gff3.bz2 datatypes (thanks to `@FredericBGA `__). `Pull Request 8967`_ * Make mol2 visible (thanks to `@galaxyproject `__). `Pull Request 8995`_ * Add a datatype subclass for CAT (Contig Annotation Tool) (thanks to `@jj-umn `__). `Pull Request 9087`_ * Fix cool sniffing on python3 `Pull Request 9153`_ * Allow tabular.gz / add embl to uploadable formats `Pull Request 9293`_ Builtin Tool Updates =========================================================== .. tools * Upgrade askomics interactive tool (thanks to `@xgaia `__). `Pull Request 8517`_ * Remove collection ID character restriction from 'Relabel collection from file' tool (thanks to `@brinkmanlab `__). `Pull Request 8571`_ * Allow space, dot and comma in relabel identifier tool `Pull Request 8757`_ * Fix script shebangs (thanks to `@nsoranzo `__). `Pull Request 8888`_ * grouping: strip newlines (thanks to `@bernt-matthias `__). `Pull Request 8953`_ * Allow admins to import tools/workflows from paths. `Pull Request 9003`_ * Add requirements to interval_to_bed_converter.xml `Pull Request 9041`_ * Move sam_pileup to GALAXY_LIB_TOOLS_VERSIONED `Pull Request 9320`_ * Add requirements, fix legacy tools and move them out of GALAXY_LIB_TOOLS_UNVERSIONED `Pull Request 9336`_ * Add requirements to (almost) all converters, profile and minor fixes `Pull Request 9345`_ * Fix version in which ``sam_pileup`` was fixed (thanks to `@nsoranzo `__). `Pull Request 9350`_ * Expunge tool shed repository objects, prevents ParentInstanceDetachedError `Pull Request 9354`_ * Remove GenomeSpace tools, OpenID, UI and requirements (thanks to `@nsoranzo `__). `Pull Request 9363`_ * Fix maf tools `Pull Request 9393`_ * XML fix for joiner.xml. `Pull Request 9399`_ Release Notes =========================================================== Please see the :doc:`full release notes <20.01_announce>` for more details. .. include:: 20.01_prs.rst .. include:: _thanks.rst