=========================================================== September 2019 Galaxy Release (v 19.09) =========================================================== .. include:: _header.rst Highlights =========================================================== **Workflow Reporting** John Chilton added embedded reports to workflows. These are reports which are automatically available upon workflow completion and can discuss the contents of a workflow, point out interesting aspects of individual outputs, and generally help you summarize the outputs for colleagues in a comprehensible way! .. figure:: images/19.09-wf-reports.gif :alt: Workflow reports **Awesome Visualizations** The Community (that is you!) added not one, not two, but **three** new awesome visualizations in this release allowing for free style image annotation, visualizing spatial data on OpenLayers maps, and exploring HIV NGS data with hyphy-vision. Details and screenshots below. Thanks go to `@anuprulez `__ and `@veg `__ **Cleaner History Menu** Check out the new, cleaner history menu! Many of the extraneous actions were moved out so you can more quickly do what you need to do: .. figure:: images/19.09-history-menu.png :alt: New history menu Also check out the `19.09 admin/dev release notes `__. New Visualizations =========================================================== .. visualizations `@anuprulez `__ has implemented free style image annotation, allowing you to make notes on images in Galaxy and save these annotations. `Pull Request 6891`_ .. figure:: https://user-images.githubusercontent.com/3022518/47093799-3980c580-d22a-11e8-9f70-b58c624b7b4d.png :alt: image annotation screenshot `@anuprulez `__ has *also* implemented an OpenLayers based map visualization, allowing you to visualize your GIS data in Galaxy. `Pull Request 7888`_ .. figure:: https://user-images.githubusercontent.com/3022518/57146482-affba400-6dc5-11e9-9dcd-c0d03810ca0d.png :alt: map visualization screenshot Other visualizations include: * hyphy-vision (thanks to `@veg `__). `Pull Request 8227`_ * iCn3D `Pull Request 8347`_ New Datatypes =========================================================== .. datatypes * Shapefile GIS data is now supported (thanks to `@Alanamosse `__). `Pull Request 7615`_ * Add mcool datatype and extend h5 tool output testing (thanks to `@msauria `__). `Pull Request 7993`_ * Add hyphy_results.json datatype (thanks to `@veg `__). `Pull Request 8186`_ * Add pgp and osw datatypes as used in OpenSWATH experiments (thanks to `@bgruening `__). `Pull Request 8458`_ * Add ckpt datatype (thanks to `@astrovsky01 `__). `Pull Request 8086`_ * Add dada2 datatypes (thanks to `@bernt-matthias `__). `Pull Request 7895`_ * Add rDock active site datatype (thanks to `@bgruening `__). `Pull Request 8727`_ * Add Kallistobus datatypes (thanks to `@astrovsky01 `__). `Pull Request 8229`_ Builtin Tool Updates =========================================================== .. tools * Various collection operation tool improvements (thanks to `@mvdbeek `__). `Pull Request 8038`_ * Enhance unzip/zip collection collection operation to annotate output format properly (thanks to `@bernt-matthias `__). `Pull Request 8239`_ Release Notes =========================================================== Please see the :doc:`full release notes <19.09_announce>` for more details. .. include:: 19.09_prs.rst .. include:: _thanks.rst