Source code for galaxy.model.migrate.versions.0015_tagging

"""
This migration script adds the tables necessary to support tagging of histories,
datasets, and history-dataset associations (user views of datasets).
"""

import logging

from migrate import UniqueConstraint
from sqlalchemy import Column, ForeignKey, Integer, MetaData, Table

from galaxy.model.custom_types import TrimmedString
from galaxy.model.migrate.versions.util import create_table, drop_table

log = logging.getLogger(__name__)
metadata = MetaData()

# New tables to support tagging of histories, datasets, and history-dataset associations.
Tag_table = Table("tag", metadata,
                  Column("id", Integer, primary_key=True),
                  Column("type", Integer),
                  Column("parent_id", Integer, ForeignKey("tag.id")),
                  Column("name", TrimmedString(255)),
                  UniqueConstraint("name"))

HistoryTagAssociation_table = Table("history_tag_association", metadata,
                                    Column("history_id", Integer, ForeignKey("history.id"), index=True),
                                    Column("tag_id", Integer, ForeignKey("tag.id"), index=True),
                                    Column("user_tname", TrimmedString(255), index=True),
                                    Column("value", TrimmedString(255), index=True),
                                    Column("user_value", TrimmedString(255), index=True))

DatasetTagAssociation_table = Table("dataset_tag_association", metadata,
                                    Column("dataset_id", Integer, ForeignKey("dataset.id"), index=True),
                                    Column("tag_id", Integer, ForeignKey("tag.id"), index=True),
                                    Column("user_tname", TrimmedString(255), index=True),
                                    Column("value", TrimmedString(255), index=True),
                                    Column("user_value", TrimmedString(255), index=True))

HistoryDatasetAssociationTagAssociation_table = Table("history_dataset_association_tag_association", metadata,
                                                      Column("history_dataset_association_id", Integer, ForeignKey("history_dataset_association.id"), index=True),
                                                      Column("tag_id", Integer, ForeignKey("tag.id"), index=True),
                                                      Column("user_tname", TrimmedString(255), index=True),
                                                      Column("value", TrimmedString(255), index=True),
                                                      Column("user_value", TrimmedString(255), index=True))


[docs]def upgrade(migrate_engine):
    print(__doc__)
    metadata.bind = migrate_engine
    metadata.reflect()

    create_table(Tag_table)
    create_table(HistoryTagAssociation_table)
    create_table(DatasetTagAssociation_table)
    create_table(HistoryDatasetAssociationTagAssociation_table)


[docs]def downgrade(migrate_engine):
    metadata.bind = migrate_engine
    metadata.reflect()

    drop_table(HistoryDatasetAssociationTagAssociation_table)
    drop_table(DatasetTagAssociation_table)
    drop_table(HistoryTagAssociation_table)
    drop_table(Tag_table)