=========================================================== May 2017 Galaxy Release (v 17.05) =========================================================== .. include:: _header.rst Highlights =========================================================== **Tag your data with propagating hashtags** Large Galaxy histories used to be messy. Hashtags make it easy to track dataset (and collection) relationships. These two movies (both under a minute) explain how to use this `with datasets `__ and `with collections `__. Learn more about Galaxy histories in our updated `tutorial `__ **Drag & Drop datasets into tool inputs** Interface now allows dragging datasets from history panel into the content selectors of the tool form. Implemented in `Pull Request 3871`_. **Upload directly to a collection** You can now bypass the history manipulation and upload your data straight into a collection for convenience. Learn more about collections and how to use them in a new `tutorial `__. We extend special thanks to the 64 `New Contributors`_ to Galaxy in the past year. Get Galaxy ========== The code lives at `Github `__ and you should have `Git `__ to obtain it. To get a new Galaxy repository run: .. code-block:: shell $ git clone -b release_17.05 https://github.com/galaxyproject/galaxy.git To update an existing Galaxy repository run: .. code-block:: shell $ git checkout release_17.05 && git pull --ff-only origin release_17.05 See the community `hub `__ for additional details regarding the source code locations. Additionaly there are `New Configuration Options`_ and `New Datatypes`_ sections. Release Notes =========================================================== .. include:: 17.05.rst :start-after: announce_start New Contributors ================ We thank these new contributors that helped with the Galaxy codebase since 16.04: * Evgeny Anatskiy * Abdulrahman Azab * balto * Bérénice Batut * Marius van den Beek * Maria Bernard * Jean-Frédéric Berthelot * Léo Biscassi * Clemens Blank * Jorrit Boekel * Christian Y. Brenninkmeijer * Freek de Bruijn * Matt Chambers * Peter Cock * Matthias Desmet * Shane Dowling * Ignacio Eguinoa * Mark Einon * fescudie * Anne Fouilloux * Jean-Frédéric * Maximilian Friedersdorff * Ben Fulton * Carrie Ganote * Ryan Golhar * Peter van Heusden * Saskia Hiltemann * Hans-Rudolf Hotz * Manabu Ishii * Xiaoqian Jiang * Iyad Kandalaft * Edward Kirton * Jasper Koehorst * Anup Kumar * Delphine Lariviere * Yvan Le Bras * Gildas Le Corguillé * Alexander Lenail * Pierre Lindenbaum * Mikael Loaec * Thoba Lose * Zipho Mashologu * Hervé Ménager * Pablo Moreno * Takao Nakaguchi * Balthazar Pavot * Matt Ralston * ramezrawas * Athos Ribeiro * Devon Ryan * Michael Sauria * Varun Shankar * Timur Shtatland * Sourav Singh * Eteri Sokhoyan * Nick Stoler * Scott Szakonyi * Jesse c j van Dam * Ashok Varadharajan * Jeremy Volkening * Pavan Videm * Junzhou Wang * Joachim Wolff * Thomas Wollmann * Jay Young New Configuration Options ========================= Below are the newly added options you can configure in ``galaxy.ini``. To see the whole sample file visit our GitHub `repository `__. .. code-block:: shell # Set to True to enable monitoring of the tool_data and shed_tool_data_path # directories. If changes in tool data table files are found, the tool data # tables for that data manager are automatically reloaded. # Watchdog ( https://pypi.python.org/pypi/watchdog ) must be installed and # available to Galaxy to use this option. Other options include 'auto' # which will attempt to use the watchdog library if it is available but won't # fail to load Galaxy if it is not and 'polling' which will use a less # efficient monitoring scheme that may work in wider range of scenarios # than the watchdog default. #watch_tool_data_dir = False # To run interactive environment containers in Docker Swarm mode (on an # existing swarm), set this option to True and set `docker_connect_port` in the # IE plugin config (ini) file(s) of any IE plugins you have enabled and ensure # that you are not using any `docker run`-specific options in your plugins' # `command_inject` options (swarm mode services run using `docker service # create`, which has a different and more limited set of options). This option # can be overridden on a per-plugin basis by using the `swarm_mode` option in # the plugin's ini config file. #interactive_environment_swarm_mode = False # Galaxy can run a "swarm manager" service that will monitor utilization of the # swarm and provision/deprovision worker nodes as necessary. The service has # its own configuration file. #swarm_manager_config_file = config/swarm_manager_conf.yml # Log to graphite # Graphite is an external statistics aggregator (https://github.com/graphite-project/carbon) # Enabling the following options will cause galaxy to log request timing and # other statistics to the configured graphite instance. The graphite_prefix is # useful if you are running multiple Galaxy instances and want to segment # statistics between them within the same aggregator. #graphite_host= #graphite_port=2003 #graphite_prefix=galaxy # Enable the new container interface for Interactive Environments #enable_beta_containers_interface = False New Datatypes ============= Below are the newly added datatypes and sniffers you can configure in ``datatypes_conf.xml``. To see the whole sample file visit our GitHub `repository `__. .. code-block:: xml .. include:: _thanks.rst