Warning

This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

Source code for galaxy.webapps.galaxy.api.dynamic_tools

import logging

from galaxy import util, web
from galaxy.exceptions import ObjectNotFound
from galaxy.web import expose_api
from galaxy.web import expose_api_anonymous_and_sessionless
from galaxy.webapps.base.controller import BaseAPIController

log = logging.getLogger(__name__)


[docs]class DynamicToolsController(BaseAPIController): """ RESTful controller for interactions with dynamic tools. Dynamic tools are tools defined in the database. Use the tools controller to run these tools and view functional information. """
[docs] def __init__(self, app): super().__init__(app)
[docs] @expose_api_anonymous_and_sessionless def index(self, trans, **kwds): """ GET /api/dynamic_tools This returns meta-information about the dynamic tool, such as tool_uuid. To use the tool or view funtional information such as inputs and outputs, use the standard tools API indexed by the ID (and optionally version) returned from this endpoint. """ manager = self.app.dynamic_tools_manager return list( map(lambda t: t.to_dict(), manager.list_tools()) )
[docs] @expose_api_anonymous_and_sessionless def show(self, trans, id, **kwd): """ GET /api/dynamic_tools/{encoded_dynamic_tool_id|tool_uuid} """ self._get_dynamic_tool(trans, id).to_dict()
[docs] @web.require_admin @expose_api def create(self, trans, payload, **kwd): """ POST /api/dynamic_tools The payload is expected to be a tool definition to dynamically load into Galaxy's toolbox. :type representation: dict :param representation: a JSON-ified tool description to load :type uuid: str :param uuid: the uuid to associate with the tool being created """ dynamic_tool = self.app.dynamic_tools_manager.create_tool( trans, payload, allow_load=util.asbool(kwd.get("allow_load", True)) ) return dynamic_tool.to_dict()
[docs] @web.require_admin @expose_api def delete(self, trans, id, **kwd): """ DELETE /api/dynamic_tools/{encoded_dynamic_tool_id|tool_uuid} Deactivate the specified dynamic tool. Deactivated tools will not be loaded into the toolbox. """ manager = self.app.dynamic_tools_manager dynamic_tool = self._get_dynamic_tool(trans, id) updated_dynamic_tool = manager.deactivate(dynamic_tool) return updated_dynamic_tool.to_dict()
def _get_dynamic_tool(self, trans, request_id): manager = self.app.dynamic_tools_manager if util.is_uuid(request_id): dynamic_tool = manager.get_tool_by_uuid(request_id) else: dynamic_tool = manager.get_tool_by_id(trans.security.decode_id(request_id)) if dynamic_tool is None: raise ObjectNotFound() return dynamic_tool