galaxy\.datatypes\.converters package ===================================== .. automodule:: galaxy.datatypes.converters :members: :undoc-members: :show-inheritance: Submodules ---------- galaxy\.datatypes\.converters\.bed\_to\_gff\_converter module ------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.bed_to_gff_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.bedgraph\_to\_array\_tree\_converter module -------------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.bedgraph_to_array_tree_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.bgzip module ------------------------------------------- .. automodule:: galaxy.datatypes.converters.bgzip :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.cram\_to\_bam module --------------------------------------------------- .. automodule:: galaxy.datatypes.converters.cram_to_bam :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.fasta\_to\_len module ---------------------------------------------------- .. automodule:: galaxy.datatypes.converters.fasta_to_len :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.fasta\_to\_tabular\_converter module ------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.fasta_to_tabular_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.fastq\_to\_fqtoc module ------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.fastq_to_fqtoc :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.fastqsolexa\_to\_fasta\_converter module ----------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.fastqsolexa_to_fasta_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.fastqsolexa\_to\_qual\_converter module ---------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.fastqsolexa_to_qual_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.gff\_to\_bed\_converter module ------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.gff_to_bed_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.gff\_to\_interval\_index\_converter module ------------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.gff_to_interval_index_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.interval\_to\_bed\_converter module ------------------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.interval_to_bed_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.interval\_to\_bedstrict\_converter module ------------------------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.interval_to_bedstrict_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.interval\_to\_coverage module ------------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.interval_to_coverage :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.interval\_to\_fli module ------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.interval_to_fli :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.interval\_to\_interval\_index\_converter module ------------------------------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.interval_to_interval_index_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.interval\_to\_tabix\_converter module -------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.interval_to_tabix_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.lped\_to\_fped\_converter module --------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.lped_to_fped_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.lped\_to\_pbed\_converter module --------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.lped_to_pbed_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.maf\_to\_fasta\_converter module --------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.maf_to_fasta_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.maf\_to\_interval\_converter module ------------------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.maf_to_interval_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.pbed\_ldreduced\_converter module ---------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.pbed_ldreduced_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.pbed\_to\_lped\_converter module --------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.pbed_to_lped_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.picard\_interval\_list\_to\_bed6\_converter module --------------------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.picard_interval_list_to_bed6_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.pileup\_to\_interval\_index\_converter module ---------------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.pileup_to_interval_index_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.ref\_to\_seq\_taxonomy\_converter module ----------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.ref_to_seq_taxonomy_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.sam\_to\_bam module -------------------------------------------------- .. automodule:: galaxy.datatypes.converters.sam_to_bam :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.tabular\_to\_dbnsfp module --------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.tabular_to_dbnsfp :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.vcf\_to\_interval\_index\_converter module ------------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.vcf_to_interval_index_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.vcf\_to\_vcf\_bgzip module --------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.vcf_to_vcf_bgzip :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.wiggle\_to\_array\_tree\_converter module ------------------------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.wiggle_to_array_tree_converter :members: :undoc-members: :show-inheritance: galaxy\.datatypes\.converters\.wiggle\_to\_simple\_converter module ------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.wiggle_to_simple_converter :members: :undoc-members: :show-inheritance: