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Source code for galaxy.tools.deps.mulled.mulled_build_tool

#!/usr/bin/env python
"""Build a mulled images for a tool source (Galaxy or CWL tool).

Examples:

Build mulled images for requirements defined in a tool:

    mulled-build-tool build path/to/tool_file.xml

"""

from galaxy.tools.parser import get_tool_source

from ._cli import arg_parser
from .mulled_build import (
    add_build_arguments,
    add_single_image_arguments,
    args_to_mull_targets_kwds,
    build_target,
    mull_targets,
)


[docs]def main(argv=None): """Main entry-point for the CLI tool.""" parser = arg_parser(argv, globals()) add_build_arguments(parser) add_single_image_arguments(parser) parser.add_argument('command', metavar='COMMAND', help='Command (build-and-test, build, all)') parser.add_argument('tool', metavar="TOOL", default=None, help="Path to tool to build mulled image for.") args = parser.parse_args() tool_source = get_tool_source(args.tool) requirements, _ = tool_source.parse_requirements_and_containers() targets = requirements_to_mulled_targets(requirements) kwds = args_to_mull_targets_kwds(args) mull_targets(targets, **kwds)
[docs]def requirements_to_mulled_targets(requirements): """Convert Galaxy's representation of requirements into mulled Target objects. Only package requirements are retained. """ package_requirements = [r for r in requirements if r.type == "package"] targets = [build_target(r.name, r.version) for r in package_requirements] return targets
__all__ = ("main", "requirements_to_mulled_targets") if __name__ == '__main__': main()