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Source code for galaxy.jobs.runners.util.cli.shell.rsh

import logging
import time

import paramiko

from .local import LocalShell
from ....util import Bunch

log = logging.getLogger(__name__)
logging.getLogger("paramiko").setLevel(logging.WARNING)  # paramiko logging is very verbose

__all__ = ('RemoteShell', 'SecureShell', 'GlobusSecureShell', 'ParamikoShell')

[docs]class RemoteShell(LocalShell):
[docs] def __init__(self, rsh='rsh', rcp='rcp', hostname='localhost', username=None, **kwargs): super(RemoteShell, self).__init__(**kwargs) self.rsh = rsh self.rcp = rcp self.hostname = hostname self.username = username self.sessions = {}
[docs] def execute(self, cmd, persist=False, timeout=60): # TODO: implement persistence if self.username is None: fullcmd = '%s %s %s' % (self.rsh, self.hostname, cmd) else: fullcmd = '%s -l %s %s %s' % (self.rsh, self.username, self.hostname, cmd) return super(RemoteShell, self).execute(fullcmd, persist, timeout)
[docs]class SecureShell(RemoteShell): SSH_NEW_KEY_STRING = 'Are you sure you want to continue connecting'
[docs] def __init__(self, rsh='ssh', rcp='scp', private_key=None, port=None, strict_host_key_checking=True, **kwargs): strict_host_key_checking = "yes" if strict_host_key_checking else "no" rsh += " -oStrictHostKeyChecking=%s -oConnectTimeout=60" % strict_host_key_checking rcp += " -oStrictHostKeyChecking=%s -oConnectTimeout=60" % strict_host_key_checking if private_key: rsh += " -i %s" % private_key rcp += " -i %s" % private_key if port: rsh += " -p %s" % port rcp += " -p %s" % port super(SecureShell, self).__init__(rsh=rsh, rcp=rcp, **kwargs)
[docs]class ParamikoShell(object):
[docs] def __init__(self, username, hostname, password=None, private_key=None, port=22, timeout=60, **kwargs): self.username = username self.hostname = hostname self.password = password self.private_key = private_key self.port = int(port) if port else port self.timeout = int(timeout) if timeout else timeout self.ssh = paramiko.SSHClient() self.ssh.set_missing_host_key_policy(paramiko.AutoAddPolicy()) self.connect()
[docs] def connect(self): self.ssh.connect(hostname=self.hostname, port=self.port, username=self.username, password=self.password, key_filename=self.private_key, timeout=self.timeout)
[docs] def execute(self, cmd, timeout=60): try: _, stdout, stderr = self._execute(cmd, timeout) except paramiko.SSHException as e: log.error(e) time.sleep(10) self.connect() _, stdout, stderr = self._execute(cmd, timeout) return_code = stdout.channel.recv_exit_status() return Bunch(stdout=stdout.read(), stderr=stderr.read(), returncode=return_code)
def _execute(self, cmd, timeout): return self.ssh.exec_command(cmd, timeout=timeout)
[docs]class GlobusSecureShell(SecureShell):
[docs] def __init__(self, rsh='gsissh', rcp='gsiscp', **kwargs): super(GlobusSecureShell, self).__init__(rsh=rsh, rcp=rcp, **kwargs)