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Source code for galaxy.tools.toolbox.lineages.factory

from .stock import StockLineage
from .tool_shed import ToolShedLineage

def remove_version_from_guid( guid ):
    Removes version from toolshed-derived tool_id(=guid).
    if "/repos/" not in guid:
        return None
    last_slash = guid.rfind('/')
    return guid[:last_slash]

[docs]class LineageMap(object): """ Map each unique tool id to a lineage object. """
[docs] def __init__(self, app): self.lineage_map = {} self.app = app
[docs] def register(self, tool, from_toolshed=False): tool_id = tool.id versionless_tool_id = remove_version_from_guid( tool_id ) if from_toolshed: lineage = ToolShedLineage.from_tool(self.app, tool) else: lineage = StockLineage.from_tool( tool ) if versionless_tool_id and versionless_tool_id not in self.lineage_map: self.lineage_map[versionless_tool_id] = lineage if tool_id not in self.lineage_map: self.lineage_map[tool_id] = lineage return self.lineage_map[tool_id]
[docs] def get(self, tool_id): if tool_id not in self.lineage_map: lineage = ToolShedLineage.from_tool_id( self.app, tool_id ) if lineage: self.lineage_map[tool_id] = lineage return self.lineage_map.get(tool_id, None)
[docs] def get_versionless(self, tool_id): versionless_tool_id = remove_version_from_guid(tool_id) return self.lineage_map.get(versionless_tool_id, None)
__all__ = ("LineageMap", )