.. to_doc

22.05
===============================

.. announce_start

Enhancements
-------------------------------

* Add new molecule datatypes
  (thanks to `@muon-spectroscopy-computational-project <https://github.com/muon-spectroscopy-computational-project>`__).
  `Pull Request 12375`_
* Add DEFERRED datasets to Galaxy
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 12533`_
* Add Storage dashboard
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13113`_
* Add built-in converters to tool panel
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13447`_
* Enable infinite scrolling / pagination for history and collection items
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13477`_
* Replace SQLAlchemy Migrate with Alembic
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13513`_
* Add filtering to new History
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13591`_
* Expose input step order and rework calculation of node position in the workflow editor
  (thanks to `@simonbray <https://github.com/simonbray>`__).
  `Pull Request 13641`_
* Focus cursor in text box after clearing search term
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13672`_
* Add 3D PCA visualization
  (thanks to `@xtrojak <https://github.com/xtrojak>`__).
  `Pull Request 13771`_
* Replace bootstrap-tour.js with popper.js
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13778`_
* Add and update various interactive tools
  (thanks to `@gmauro <https://github.com/gmauro>`__).
  `Pull Request 13811`_
* Add more bulk operations to Beta History
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13877`_
* Update color scheme collection progress bar
  (thanks to `@assuntad23 <https://github.com/assuntad23>`__).
  `Pull Request 14031`_
* Add gulp target for force-rebuild of viz plugins
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13370`_
* Add mzqc datatype
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 13564`_
* Update mypy to 0.942 and fix new mypy errors
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13650`_
* Create data_fetch and set_metadata celery tasks
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13655`_
* Add bigWig to Wig converter
  (thanks to `@gallardoalba <https://github.com/gallardoalba>`__).
  `Pull Request 13708`_
* Replace last use of deprecated ``imp`` module
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13817`_
* Add support for gz-compressed gfa1 and gfa2 files
  (thanks to `@gallardoalba <https://github.com/gallardoalba>`__).
  `Pull Request 13927`_
* New Datatype: QIIME 2
  (thanks to `@ebolyen <https://github.com/ebolyen>`__).
  `Pull Request 14216`_
* Add scool datatype
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 14480`_
* Add JupyTool, user-configurable interactive Jupyter-based tool
  (thanks to `@blankenberg <https://github.com/blankenberg>`__).
  `Pull Request 13606`_
* Simplified workflow form runtime options
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13613`_
* Selenium tests for much of `#13600 <https://github.com/galaxyproject/galaxy/issues/13600>`__
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13673`_
* Rework workflow index API for more consistency between deleted/hidden and showing shared workflows
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13699`_
* Implement API endpoints and tests for workflow sharing options
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13719`_
* Fix workflow file import and enhance UX for workflow imports
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13754`_
* Implement more useful workflow tagging
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13786`_
* Implement initial jest unit tests for WorkflowList.vue
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13856`_
* Use an Enum for invocations view
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13875`_
* Workflow List Vue Component Improvements
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13876`_
* More Workflow List Component Improvements
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13892`_
* API workflow index allow 'searching' by owner
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13934`_
* More Uniform URI Access and Validation
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13947`_
* Localize workflow deletion confirmation message
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13987`_
* Add workflow deletion selenium tests
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13994`_
* Update Client dependency, swap to node 16
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13282`_
* Run jest tests using node 16 in CI
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13434`_
* Drop last references to uWSGI
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13593`_
* Add support for gulp build process to use a configurable directory
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13657`_
* Formalize supported browsers, drop transpilation, enforce with eslint
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13709`_
* Swap to vue/recommended eslint
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13781`_
* Citation separation
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13847`_
* Add client build timestamp to application config
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13874`_
* Attach dataset source in model store imports
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13560`_
* Overhaul job metrics
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13634`_
* More Python typing around job evaluation code
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13659`_
* Migrate jobs index to FastAPI controller
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13767`_
* Port api/tools/fetch to FastAPI, add schema, and use `__FETCH_DATA__` in most tests
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13793`_
* Jobs Index and Grid Improvements
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13893`_
* make maximum number of retries for username validation configurable
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 13177`_
* Workflow invocation pagination
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13183`_
* Menu cleanup
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13288`_
* Add celery and gravity files to .gitignore
  (thanks to `@davebx <https://github.com/davebx>`__).
  `Pull Request 13310`_
* Drop remaining references to uWSGI
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13585`_
* Remove tus uploads during fetch data job
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13945`_
* A few small Gravity updates
  (thanks to `@natefoo <https://github.com/natefoo>`__).
  `Pull Request 13995`_
* Add log rotation options and update logging documentation
  (thanks to `@natefoo <https://github.com/natefoo>`__).
  `Pull Request 14457`_
* Allow site-specific history default, leave fallback option to legacy
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 11748`_
* Check prefix before complete loading when checking yaml and cwl tools
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 12604`_
* Maintain redirect if login is necessary
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13274`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 13312`_
* Replace data providers and scrolling in new history
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13318`_
* Block workflow invocation if wrong tool versions installed
  (thanks to `@simonbray <https://github.com/simonbray>`__).
  `Pull Request 13335`_
* Report code coverage (for pytest test suites)
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13358`_
* Feature/hujambo dunia/issue 12022/20220211 workflows node overlap enhancement
  (thanks to `@hujambo-dunia <https://github.com/hujambo-dunia>`__).
  `Pull Request 13361`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 13364`_
* Split loading current history from loading all histories
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13367`_
* Add source_metadata attribute for workflows imported using TRS ID or via URL
  (thanks to `@simonbray <https://github.com/simonbray>`__).
  `Pull Request 13376`_
* Allow legacy EDAM mappings
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13413`_
* Add sorting function to Saved Rules Selector
  (thanks to `@assuntad23 <https://github.com/assuntad23>`__).
  `Pull Request 13427`_
* Add tooltip preview for rules in SavedRulesSelector
  (thanks to `@assuntad23 <https://github.com/assuntad23>`__).
  `Pull Request 13438`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 13449`_
* let linter check for duplicated names/labels
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 13459`_
* Small enhancements from the deferred data branch
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13475`_
* Various Celery Framework Enhancements
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13488`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 13490`_
* Run tests with ``metadata_strategy: extended`` on weekly schedule
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13503`_
* Integration end-to-end test for PDF export
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13504`_
* Add API endpoint to recalculate user disk usage
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13508`_
* Add retries to `test_github_search`
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13509`_
* More small atomic enhancements from the deferred data branch
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13517`_
* Disable implicit optional types
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13519`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 13530`_
* Enable automatically loading webhook based on url
  (thanks to `@hexylena <https://github.com/hexylena>`__).
  `Pull Request 13535`_
* Card expansion animation in new history
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13545`_
* History bulk operations
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13555`_
* Allow setting a workflow as (un)importable via the API
  (thanks to `@simonbray <https://github.com/simonbray>`__).
  `Pull Request 13571`_
* Add nonce mismatch hint to exception msg
  (thanks to `@afgane <https://github.com/afgane>`__).
  `Pull Request 13572`_
* Add legacy routes to openapi schema
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13579`_
* Add pre-commit config
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13580`_
* linter: allow setting output format with actions
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 13583`_
* Expose TRS id of imported workflows in the UI
  (thanks to `@simonbray <https://github.com/simonbray>`__).
  `Pull Request 13600`_
* Improve matching reliability, add test cases
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13623`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 13625`_
* Add advanced filtering panel to history, align appearance of panels
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13626`_
* Feature for `#13517 <https://github.com/galaxyproject/galaxy/issues/13517>`__: Workflow Editor - Scroll Wheel Zoom feature
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13630`_
* Add optional dependency on total-perspective-vortex
  (thanks to `@nuwang <https://github.com/nuwang>`__).
  `Pull Request 13636`_
* Decouple legacy model from new history proxy, consolidate history stores
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13646`_
* Porting undocumented API: '/api/groups/{encoded_group_id}/users' to FastAPI
  (thanks to `@shivani-sangwan <https://github.com/shivani-sangwan>`__).
  `Pull Request 13648`_
* Adjust new history navigation header
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13649`_
* Speed up sniffers by using lru_cache on ffprobe, skip binary sniffers on text files
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13654`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 13661`_
* Disable implicitly attaching HDAs to histories
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13670`_
* Use authenticated git protocol in pre-commit repo
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13680`_
* Use API link to download datasets
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13681`_
* Add OIDC PKCE parameter support
  (thanks to `@gecage952 <https://github.com/gecage952>`__).
  `Pull Request 13683`_
* Infrastructure for building dynamic files for download asynchronously
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13691`_
* Update irods client
  (thanks to `@kxk302 <https://github.com/kxk302>`__).
  `Pull Request 13694`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 13702`_
* Display History Selection Status in Operations
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13705`_
* Update migrations documentation (inline + readme)
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13710`_
* Add more type annotations to test populators
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13716`_
* Watch changes to history object instead of changed history items
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13721`_
* Anonymous user history menu fixes
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13724`_
* Implement pagination of workflows grid
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13725`_
* Workflow index API fix and testing
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13733`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 13735`_
* Add history component tests
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13739`_
* Highlight Inputs for a given dataset/collection in the history
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13740`_
* Add Number of Hidden/Deleted Datasets to History Details
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13752`_
* Respect conda channels in mulled docker container building
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 13755`_
* Process pasted content with tus
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13770`_
* Restore homogeneous dataset collection indicator
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13772`_
* Adjust tours and tour tests to new history
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13777`_
* Switch workflow sharing to common Vue component
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13780`_
* Replace 2 uses of deprecated ``imp`` module
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13784`_
* Fix slow download of large files
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13789`_
* Update committers list
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13791`_
* Allow users to view invocations only for a particular workflow
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13792`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 13797`_
* Adjustments to hidden/deleted history links
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13802`_
* Highlight filter textfield when populated
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13806`_
* Limit Custos SDK logging from showing up in Galaxy
  (thanks to `@afgane <https://github.com/afgane>`__).
  `Pull Request 13808`_
* Use ``load_app_properties()`` to load Galaxy config file
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13809`_
* Improve assert error for transient citation rendering test issue
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13814`_
* Add allowance for members changing their own name…
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13819`_
* Populate filterSettings when filterText changes
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13821`_
* Custos Login Ambiguity enhancement
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13829`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 13836`_
* Beta History: display 'processing' message while running bulk operations
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13844`_
* Typing fixes from deferred data branch
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13845`_
* Beta History: display `global` history bulk operations only when necessary
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13846`_
* Beta History: notify query selection break
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13850`_
* Improved typing of Galaxy model store related stuff
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13861`_
* galaxy-tool-util: better link in the README
  (thanks to `@mr-c <https://github.com/mr-c>`__).
  `Pull Request 13863`_
* Various CI fixes and enhancements
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13864`_
* Workflow Index Fixes and Improvements
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13867`_
* Pages Index API Improvements
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13870`_
* Don't reprint a traceback that has already been printed at the end of galaxy-tool-test
  (thanks to `@natefoo <https://github.com/natefoo>`__).
  `Pull Request 13872`_
* Infrastructure for Jest Testing of Localization
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13880`_
* Decompose History Export UI
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13908`_
* Advanced filter menu enhancements
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13910`_
* Beta History: handle bulk operation errors
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13911`_
* Drop uncredit pull requestor list
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13915`_
* Replace scratchbook with window manager
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13922`_
* Assorted Python typing.
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13932`_
* More explicit History Import button
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13946`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 13948`_
* Recommend rebasing PRs over merging the target branch
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13961`_
* More remove legacy tool dependencies handling in tool shed
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13966`_
* Refactor authenticate controller into a services layer
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13967`_
* Use colon symbol instead of equal sign in history filters
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13971`_
* Remove can_eliminate_tool_dependency from tool shed code
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13975`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 13981`_
* Run CI on test_base so we can catch issues with packaging
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13983`_
* Add history update time to Beta History
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13989`_
* More workflow Jest tests
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13993`_
* Small tour tweaks
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13996`_
* Add text to history import/switch buttons
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 14001`_
* Script to validate tours structure
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 14003`_
* Cleaner, More Robust Workflow Creation Form Testing Logic
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 14004`_
* Add galaxy-test-driver to CI package tests
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 14011`_
* Bring galaxy-test-api under CI also
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 14012`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 14016`_
* Use setuptools custom package discovery instead of explicit listing
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 14022`_
* Add a tour for deferred datasets
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 14036`_
* Add tour requirements
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 14037`_
* Enable change datatype in bulk
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14042`_
* Updated `_generate_invocation_bco` to output a valid IEEE-2791-2020 object
  (thanks to `@biocompute-objects <https://github.com/biocompute-objects>`__).
  `Pull Request 14048`_
* Swap new hidden icon from 'lock' to 'eye-slash'
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14052`_
* Restore section and repeat block help in forms
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 14064`_
* Update Mercurial to 6.1.4
  (thanks to `@natefoo <https://github.com/natefoo>`__).
  `Pull Request 14075`_
* Prefer venv module over virtualenv
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 14077`_
* Update Python dependencies
  (thanks to `@galaxybot <https://github.com/galaxybot>`__).
  `Pull Request 14104`_
* Rephrase 'updated' to 'refreshed' in history counter
  (thanks to `@simonbray <https://github.com/simonbray>`__).
  `Pull Request 14113`_
* Support bulk dbkey and datatype collection changes
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14172`_
* Add release tag to client-submitted sentry events
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14205`_
* Add selenium tests for uploads
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 14232`_
* Only serialize history if changed since last check
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14251`_
* Add purged dataset badge
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14252`_
* Add Deleted histories plugin for DiskUsage dashboard
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14253`_
* Small speedup by using cache_ok on MetadataType
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14255`_
* Improve handling of non-existent or uninitialized database when running upgrade script
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 14329`_
* Optimize active counts query
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14338`_
* Include auth in openAPI schema
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14345`_
* Optimize History watcher to request detailed information only for expanded items
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14375`_
* Support quoted strings in bool expressions
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14406`_
* Docker k8s ansible fixes
  (thanks to `@nuwang <https://github.com/nuwang>`__).
  `Pull Request 14449`_
* Disable translogger middleware by default
  (thanks to `@natefoo <https://github.com/natefoo>`__).
  `Pull Request 14467`_
* Fix Jobs API index to accept query parameters as lists
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14482`_
* Python code formatting standard, automatic
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 11162`_
* Remove uWSGI / WSGI support
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13071`_
* Remove custom serialization views for new history, strip unused visualization details
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13355`_
* Touch up framework dependency documentation
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13379`_
* Refactor client tests to use await for mutations
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13408`_
* Relax checks for `test_github_search`
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13410`_
* Disable implicit re-imports across the project
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13476`_
* Update logging configuration documentation
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13481`_
* Upgrade syntax to Python 3.7
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13500`_
* Use Vuex for new History
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13512`_
* Add link to issue to error message
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13529`_
* Add source_metadata column to workflow table as alembic revision
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13541`_
* Misc. SQLAlchemy 2.0 upgrades
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13562`_
* Drop redundant legacy API endpoints
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13582`_
* Refactor model/mapping/migrations unit testing infrastructure
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13588`_
* Drop unused code (GIE, Swarm, workflow controller methods)
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13601`_
* Fix mypy error on bool expressions
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13712`_
* Rework admin job tables into reusable Galaxy job table component
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13769`_
* Unused client dependency purge
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13785`_
* Separate content item options into component
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13798`_
* Elminate client (direct) dependency on moment.js
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13800`_
* Move some imports on top
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13818`_
* Map Dataset declaratively
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13833`_
* Duplicates removed from filtering.js
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13835`_
* ToolSourceDisplay dynamic import for shared libs bundle size improvement
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13837`_
* Refactor toward invocations service layer
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13862`_
* Update committer login name
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13883`_
* Refactor bulk operation processing
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13890`_
* Beta History Collections: set default visible and deleted state in ContentOptions
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13939`_
* Small code cleanup fixes to galaxy.model.store related code
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13944`_
* Drop update_time from JobStateHistory
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13997`_
* Misc client eslint warning fixes
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14024`_
* Move mypy configuration to `mypy.ini`
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 14034`_
* Modernise build of packages
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 14040`_
* Update tpv rule module name and constrain version
  (thanks to `@nuwang <https://github.com/nuwang>`__).
  `Pull Request 14072`_
* Move `Show Histories Side-by-Side` menu entry below histories count
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14214`_
* Avoid loading expensive properties for all histories
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14347`_
* remove debug statements from tool search
  (thanks to `@bgruening <https://github.com/bgruening>`__).
  `Pull Request 14386`_


Fixes
-------------------------------

* Properly initialize chart settings for new visualizations
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13561`_
* Point to GTN tutorial in visualizations readme
  (thanks to `@beatrizserrano <https://github.com/beatrizserrano>`__).
  `Pull Request 13616`_
* Support phylocanvas autobuild
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14023`_
* Fix a bug in PCA artifact staging that prevents a plugin rebuild
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14148`_
* Visualization fix for MSA
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14263`_
* Tighten sniffers
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13959`_
* Don't create a BGZF index when running the compressing converter
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13969`_
* Fix bug: set creation_date on dataset.metadata, not dataset
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 14039`_
* Fix composite datatypes with ``substitute_name_with_metadata``
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14053`_
* Enable generating urls for WSGI routes within FastAPI routes
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14066`_
* Fix collection download for BAM native files
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14162`_
* Make Agp set_meta more lenient
  (thanks to `@astrovsky01 <https://github.com/astrovsky01>`__).
  `Pull Request 14277`_
* Deleted, discarded and deferred file not found tweaks
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14296`_
* Fix xml deprecation warning in ``parse_requirements_from_xml``
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 14483`_
* Fix David URL
  (thanks to `@hexylena <https://github.com/hexylena>`__).
  `Pull Request 13666`_
* Bump ncb-datasets-cli dependency to 13.14.0
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13853`_
* Fixes for JupyTool, and overlapping versions with jupyter
  (thanks to `@blankenberg <https://github.com/blankenberg>`__).
  `Pull Request 14309`_
* Grep1 tool: fix keep_header option
  (thanks to `@jancrichter <https://github.com/jancrichter>`__).
  `Pull Request 14475`_
* Fix workflow index API boolean parameters
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13698`_
* More robust workflow grid selenium tests
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13855`_
* Fix workflow bookmarking API
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13857`_
* Fix showing invocations for a particular workflow
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 14102`_
* Fix effective datatype in workflow editor node terminals
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14473`_
* Bump karma from 6.3.13 to 6.3.14 in /client
  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
  `Pull Request 13357`_
* Bump follow-redirects from 1.14.7 to 1.14.8 in /client
  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
  `Pull Request 13365`_
* Fix `UnhandledPromiseRejection` in client tests
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13435`_
* Bump prismjs from 1.26.0 to 1.27.0 in /client
  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
  `Pull Request 13448`_
* Bump url-parse from 1.5.4 to 1.5.10 in /client
  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
  `Pull Request 13450`_
* Bump karma from 6.3.14 to 6.3.16 in /client
  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
  `Pull Request 13471`_
* Update to new @galaxyproject/bootstrap-tour to fix tour anchor selection
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13539`_
* Bump node-forge from 1.2.1 to 1.3.0 in /client
  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
  `Pull Request 13596`_
* Bump minimist from 1.2.5 to 1.2.6 in /client
  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
  `Pull Request 13614`_
* Fix toolshed style loading
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13668`_
* Fix a broken code block in client\README.md
  (thanks to `@NicholasWeiner <https://github.com/NicholasWeiner>`__).
  `Pull Request 13671`_
* Bump moment from 2.29.1 to 2.29.2 in /client
  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
  `Pull Request 13703`_
* Bump async from 2.6.3 to 2.6.4 in /client
  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
  `Pull Request 13761`_
* Once committed to a plugin rebuild, stage old hash…
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14153`_
* Update yarn.lock file
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 14337`_
* Fix for uploading metadata to remote object store
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13348`_
* SLURM: check first if stopped for cancelled jobs
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 13453`_
* Fix extended_metadata jobs with dce inputs
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13553`_
* Write to exit code file before running metadata script
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13557`_
* Only stream stdout/stderr on kubernetes
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13642`_
* Improve error handling for CLI job runner
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13759`_
* Fix error when getting destinations by tag
  (thanks to `@abretaud <https://github.com/abretaud>`__).
  `Pull Request 13790`_
* Redirect stderr of trap cleanup
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13905`_
* Redirect stderr of trap cleanup
  (thanks to `@bgruening <https://github.com/bgruening>`__).
  `Pull Request 13913`_
* Remove some unused code and fix some typos
  (thanks to `@nuwang <https://github.com/nuwang>`__).
  `Pull Request 14017`_
* Fix exception handling in pulsar job runner
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14046`_
* Fix deleting jobs when deleting datasets
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14108`_
* Put revoke for canceling upload task behind ``enable_celery_tasks`` flag
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14219`_
* Specify time as datetime object in job queries
  (thanks to `@simonbray <https://github.com/simonbray>`__).
  `Pull Request 14281`_
* Drop uWSGI from Galaxy Reports documentation
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13406`_
* Fix FormElement: doesn't populate options for parameters
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13639`_
* Fix persistent mulled cache unused for repo_has_name
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13718`_
* Fix up configuration for STS.  Can't rebuild config without this
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13834`_
* Misc fixes 2022-05
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13878`_
* Fix a small error in job doc
  (thanks to `@qiagu <https://github.com/qiagu>`__).
  `Pull Request 14013`_
* Interactivetool doc/sample tweaks
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14025`_
* Decrease log level for tool not found
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14204`_
* Drop extension from config_exception
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14320`_
* Fix first startup when only python3 is on PATH
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14414`_
* Pass ``--cleanenv`` by default to singularity command
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14429`_
* Doc fixes
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 14488`_
* fix `drill_down` parameters
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 12232`_
* Trim spaces from around email addresses and usernames when registering
  (thanks to `@natefoo <https://github.com/natefoo>`__).
  `Pull Request 12482`_
* Fix a bug in username minimum length transformation and set minimum length to 1
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 13195`_
* Use dev version of Gravity temporarily
  (thanks to `@natefoo <https://github.com/natefoo>`__).
  `Pull Request 13262`_
* Update locale.js
  (thanks to `@shenweiyan <https://github.com/shenweiyan>`__).
  `Pull Request 13323`_
* Update Favorite Icon Style (Fixes `#12622 <https://github.com/galaxyproject/galaxy/issues/12622>`__)
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13332`_
* Bump tensorflow from 2.5.2 to 2.5.3 in /lib/galaxy/dependencies
  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
  `Pull Request 13345`_
* Remove node_modules when upgrading Node
  (thanks to `@natefoo <https://github.com/natefoo>`__).
  `Pull Request 13371`_
* Fix `make diff-format`
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13397`_
* Test the `webapps` package
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13402`_
* Remove uwsgi mention from debug config option
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13426`_
* Update config docs (uwsgi >> gunicorn)
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13456`_
* Progress towards SQLAlchemy 2.0 (backref_cascade issue)
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13458`_
* Fix copy tool id
  (thanks to `@itisAliRH <https://github.com/itisAliRH>`__).
  `Pull Request 13463`_
* Make test_user_library_permissions.py more robust
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13487`_
* Expand input parameter workflow steps in workflow run form
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13496`_
* More backref_cascade fixes (SQLAlchemy 2.0)
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13498`_
* Fixes for mulled search
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13532`_
* Fix for configfiles examples in galaxy.xsd
  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
  `Pull Request 13563`_
* Fix tool shed bootstrapping
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13573`_
* Fix model discovery unit tests
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13576`_
* Fix `test_callback_nonce_validation_with_bad_nonce` unit test
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13577`_
* Fixes `#13542 <https://github.com/galaxyproject/galaxy/issues/13542>`__: Click targets for folder explorer seem off
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13590`_
* Fix bug in setting check_migrate_databases config value
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13594`_
* Wrap update statement in revision to silence safe error
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13595`_
* Fix config file generation if name and filename are given
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 13602`_
* New History: Break item's name to fit and show completely
  (thanks to `@itisAliRH <https://github.com/itisAliRH>`__).
  `Pull Request 13604`_
* Handle missing error response in failed upload
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13611`_
* Fix bug to enable alembic's stamp command: revision can be a list of revisions
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13618`_
* Check if column exists before executing upgrade/downgrade operations in select revisions
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13624`_
* Fix allow admin to use private datasets
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13628`_
* update beta history from legacy `grid-view.js`
  (thanks to `@itisAliRH <https://github.com/itisAliRH>`__).
  `Pull Request 13629`_
* Minor tweak to language in history dropdown in beta history
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13631`_
* Potentially fix flakey rename test with beta history
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13633`_
* Limit tool parameter value to show only 20 lines with overflow scrolling
  (thanks to `@itisAliRH <https://github.com/itisAliRH>`__).
  `Pull Request 13635`_
* Forward type annotation of depends
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13643`_
* Fix package CI for pysam errors
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13644`_
* Fix unselect file in FTP uploader popup
  (thanks to `@itisAliRH <https://github.com/itisAliRH>`__).
  `Pull Request 13652`_
* Correct data fetch API call in the client
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13669`_
* Update supervisor config when starting galaxy via run.sh
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13674`_
* Misc fixes
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13676`_
* Fix apache upload config, update gunicorn_extra_args
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13682`_
* Respect ``GRAVITY_STATE_DIR`` when activating venv
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13685`_
* Re-add ``announce_start`` label to 22.01 release notes
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13686`_
* Fix sorting of recursively discovered datasets
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 13688`_
* Fix download collection button in history panel
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13690`_
* Two small fixes to testing infrastructure
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13693`_
* Raise a more appropriate error when there's no version table
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13695`_
* Treat db with kombu tables same as empty; adjust tests
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13700`_
* Drop symlink to removed file
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13701`_
* Better test for kombu-only tables in database
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13706`_
* Fix histories API index filter query params
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13713`_
* Miscellaneous Histories API fixes
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13717`_
* Simplify some selenium upload tests to respect either history properly
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13726`_
* Converge testing and classes for history options across new and old history panel
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13727`_
* Eliminate dependency of legacy history for history sharing tests
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13729`_
* Unquote url before using it
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 13730`_
* Fix test_navigates_galaxy.py for beta history panel
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13732`_
* Fix tests for simple_constructs.yml
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13758`_
* More robust is_beta_history() testing check
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13762`_
* Add an option to disable searching for distributed object store datasets that don't have an object_store_id
  (thanks to `@natefoo <https://github.com/natefoo>`__).
  `Pull Request 13764`_
* Fix race condition in object store dir creation
  (thanks to `@kxk302 <https://github.com/kxk302>`__).
  `Pull Request 13768`_
* Added exist_ok flag to other object stores
  (thanks to `@kxk302 <https://github.com/kxk302>`__).
  `Pull Request 13773`_
* Do not store toolbox on ToolPanelViewSearch
  (thanks to `@cat-bro <https://github.com/cat-bro>`__).
  `Pull Request 13776`_
* Fixes for sharing component error handling
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13779`_
* Beta History: fix history query counts synchronization
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13783`_
* SelectionStatus component/test fixes
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13787`_
* Fix thread accumulation in testing
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13788`_
* Potential fix for certain kind of transient Selenium library errors
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13794`_
* Pulsar fix for tools that use chromosome len files
  (thanks to `@gregvonkuster <https://github.com/gregvonkuster>`__).
  `Pull Request 13803`_
* Raise RequestValidationError in as_form decorator
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13810`_
* History animation method change, constrained info box
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 13827`_
* Trigger scroller refresh when history changes
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13832`_
* Handle fixes in the latest version of mypy.
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13843`_
* Improve name tag display in New History
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13848`_
* Beta History: selection and operations small fixes
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13858`_
* Move TusMiddleware so XForwardedMiddleware runs first
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13860`_
* Fix download of composite files via API
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13871`_
* Update gravity, fixes celery-beat in privsep setup
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13879`_
* Fix flaky user histories providers test
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13881`_
* replace encodestring with encodebytes
  (thanks to `@bgruening <https://github.com/bgruening>`__).
  `Pull Request 13884`_
* Allow disabling default history filters
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13891`_
* Backport: Respect GRAVITY_STATE_DIR when activating venv
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13897`_
* Fix typing for unpinned request dependency
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 13898`_
* Expand/collapse history dataset display content
  (thanks to `@itisAliRH <https://github.com/itisAliRH>`__).
  `Pull Request 13899`_
* Misc fixes 2022-05-11
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 13901`_
* Set default celery app for all threads
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13904`_
* Allow anonymous users to import published histories
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13906`_
* Fix date handling in workflow editor attributes panel
  (thanks to `@hujambo-dunia <https://github.com/hujambo-dunia>`__).
  `Pull Request 13912`_
* Beta History: fix reset selection
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13914`_
* Fix currently failing client tests
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13923`_
* fix two bugs in mulled container building
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 13925`_
* Bulk operations: more API tests & fixes
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13935`_
* Beta History: allow search datasets by name tag using `#`
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13952`_
* Fix job metrics route is missing
  (thanks to `@qiagu <https://github.com/qiagu>`__).
  `Pull Request 13953`_
* Bump tensorflow from 2.5.3 to 2.6.4 in /lib/galaxy/dependencies
  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
  `Pull Request 13954`_
* Update/restore collection progress bar/13743
  (thanks to `@assuntad23 <https://github.com/assuntad23>`__).
  `Pull Request 13956`_
* Use INFO log level for irods
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 13957`_
* Fix padding in history content items
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13962`_
* Refactoring and testing of workflow parameter handling
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 13965`_
* Restore Tour List View as Vue Component [PR for issue `#13796 <https://github.com/galaxyproject/galaxy/issues/13796>`__]
  (thanks to `@hujambo-dunia <https://github.com/hujambo-dunia>`__).
  `Pull Request 13968`_
* Bump tensorflow from 2.6.4 to 2.7.2 in /lib/galaxy/dependencies
  (thanks to `@galaxyproject <https://github.com/galaxyproject>`__).
  `Pull Request 13972`_
* Fix tag search non finding non-nametags
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 13979`_
* Fix job cancellation on delete dataset
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 13986`_
* Fix the swift integration tests that are using some minio container
  (thanks to `@bgruening <https://github.com/bgruening>`__).
  `Pull Request 14008`_
* Only set job state if state is not None
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14009`_
* Fix jest test warnings for saved rules and markdown test
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 14015`_
* Add missing webapp to webapp package
  (thanks to `@nuwang <https://github.com/nuwang>`__).
  `Pull Request 14018`_
* Fix missing biotools package
  (thanks to `@nuwang <https://github.com/nuwang>`__).
  `Pull Request 14020`_
* Remove fabric as a dependency for Galaxy
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 14030`_
* Add sessioncookie with ``SameSite=None; secure`` for tool_runner path
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14038`_
* Job Outputs only appear after they load
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 14049`_
* Beta History: Display history counter always
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14070`_
* Fix ``test_application_stack_post_fork`` unit test
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 14074`_
* Prevent user from closing the rule builder modal when clicking outside of it
  (thanks to `@assuntad23 <https://github.com/assuntad23>`__).
  `Pull Request 14076`_
* Fix overlapping method/var name in domain validation
  (thanks to `@natefoo <https://github.com/natefoo>`__).
  `Pull Request 14080`_
* Fix disable change datatype bulk without celery
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14085`_
* Fix rule builder input with integer values
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14086`_
* Clear history refresh timeout for snappier operations in new history
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14088`_
* Fix unlimited quota display in Storage Dashboard
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14090`_
* Update window manager margin
  (thanks to `@simonbray <https://github.com/simonbray>`__).
  `Pull Request 14091`_
* Fix minor empty History Filter bug
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 14092`_
* Write temporary files created within celery tasks to working directory
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14100`_
* Fix contains_collection check for empty root collections
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14103`_
* Improve robustness of test_exit_code_127 k8s test
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14105`_
* Adjust history store operations when switching between histories
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 14110`_
* Mark openPBS integration test cases as xfail
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14114`_
* Fix bulk operations visibility
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14115`_
* Reduce bulk operations drop-down cutting off
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14116`_
* Allow downloading individual metadata files in History
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 14124`_
* Fix: make tag filtering case insensitive
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14127`_
* Place progressbar below collection name, allow full width
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 14138`_
* Start counting collection elements at 1
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 14142`_
* Add `queued` as acceptable state for collection states
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 14143`_
* Fix: skip setting metadata on deferred datasets when changing datatype in bulk
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14149`_
* Eliminate dependency on selenium in core galaxy
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14150`_
* Adapt byte content for StreamingResponse
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14157`_
* Fix set_user function
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14158`_
* Fix sqlalchemy error
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 14164`_
* Fix importing whole folders as datasets
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14167`_
* Drop history context menu purge command
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14170`_
* History edit attributes tweaks
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14171`_
* Fix dataset link copy
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14176`_
* Fix draggable source for content items
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14179`_
* Deferred data fixes
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14181`_
* Show job progress bar while there are non-terminal jobs, declutter text
  (thanks to `@assuntad23 <https://github.com/assuntad23>`__).
  `Pull Request 14182`_
* Switch History Modal: fix pagination
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14183`_
* Fix histories API URL building
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14186`_
* Fix logic around tool favorites for anonymous users
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 14189`_
* Fix `FilesDialog` navigation back when a file source shows an error
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14190`_
* Send composite datasets directly to tusUpload
  (thanks to `@jdavcs <https://github.com/jdavcs>`__).
  `Pull Request 14191`_
* Support stop_job param in query string
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14194`_
* Replace release note videos with youtube links
  (thanks to `@hexylena <https://github.com/hexylena>`__).
  `Pull Request 14201`_
* Add ``SuppressNoResponseReturnedMiddleware``
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14202`_
* Shift 'queued' state lower in priority in collection status
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14217`_
* Generate the headers handson table uses to avoid missing header issue
  (thanks to `@assuntad23 <https://github.com/assuntad23>`__).
  `Pull Request 14218`_
* Fixes for the tus resumable upload command line script
  (thanks to `@natefoo <https://github.com/natefoo>`__).
  `Pull Request 14221`_
* HistoryFilters datepicker fix: date now shows up in field
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 14226`_
* Citation link decoding fix
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14231`_
* Place watchHistory logic in try/catch/finally
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14233`_
* Fix validation of nested element fetch data payloads
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14245`_
* History watch throttling -- relax when backgrounded
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14264`_
* Fix History dataset database entry overflow
  (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__).
  `Pull Request 14266`_
* Allow delete option when history items are shown outside of panel
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 14269`_
* Replace old storage FAQ in preferences
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14270`_
* Fix ReviewCleanupDialog state in Storage Dashboard
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14271`_
* Drop exception catching when querying db for session
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14274`_
* Small tour fixes
  (thanks to `@jmchilton <https://github.com/jmchilton>`__).
  `Pull Request 14280`_
* Fix encoding Decimal values and inf/-inf
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14284`_
* Drop dataset error controller method
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14287`_
* Fix tag autocomplete for strings that need url encoding
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14288`_
* Fix display_as with authz_method=rbac
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14289`_
* Check for app_name and link_name before unquoting
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14291`_
* Avoid race condition in disk object store delete
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14292`_
* Increase contrast of Beta label (accessibility) in Storage Dashboard
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14302`_
* Sort histories in history switcher by most recently updated
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14307`_
* Fix jobs API not allowing dates for ``date_range_min`` and ``date_range_max``
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 14315`_
* Prevent iframe from interfering with drop events
  (thanks to `@guerler <https://github.com/guerler>`__).
  `Pull Request 14318`_
* Fix local version switching
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14319`_
* Add HREF links to some history item actions
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14325`_
* Attempt to use epoch of client build time for cache busting
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14328`_
* Fix filtering by an extension list in dataset API
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 14330`_
* fix `startswith` attribute of `<options>`
  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
  `Pull Request 14332`_
* Drop serverside i18n
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14334`_
* Upgrade FastAPI to 0.79.0
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14335`_
* Avoid ``FileNotFoundError`` when Dataset is purged, but HDA is not
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14336`_
* Don't hit object store when getting size
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14340`_
* Fix ``GET /api/whoami`` when ``last_password_change`` is NULL
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 14342`_
* Fix oldstyle dataset display
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14343`_
* Reload histories when the user 'really' changes
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14349`_
* Workflow download API: check if a workflow is importable (not published)
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 14355`_
* Keep current history details on list of histories update
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14357`_
* Fix handling + encoding of spaces in tool names
  (thanks to `@hexylena <https://github.com/hexylena>`__).
  `Pull Request 14358`_
* Fix enable_account_interface option hiding too much
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14363`_
* Fix tool search config defaults
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14364`_
* Fixed tool_utils types & schema-salad pin
  (thanks to `@mr-c <https://github.com/mr-c>`__).
  `Pull Request 14371`_
* Tool search backend bug fixes
  (thanks to `@neoformit <https://github.com/neoformit>`__).
  `Pull Request 14372`_
* Fix incorrect history swapping in some cases where we swap on the client but the server is never notified
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14376`_
* Fix unhashable type in history contents API
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14388`_
* Fix validation issue for dataset_details
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14395`_
* Always allow 'copy datasets' action in history, even when empty
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14402`_
* Calculate CRC32 for files in size between 1444 and 1459 bytes
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14417`_
* Fix additional errors when requesting dataset details in history contents
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14418`_
* Fix number of jobs submitted display in tool success
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14420`_
* Fix workflow direct step insertion in workflow editor
  (thanks to `@dannon <https://github.com/dannon>`__).
  `Pull Request 14424`_
* Make history contents filter with `contains` case insensitive
  (thanks to `@davelopez <https://github.com/davelopez>`__).
  `Pull Request 14426`_
* Update pylibmagic and gravity
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14428`_
* Fix cache image singularity resolver if path contains uppercase chars
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14431`_
* Revert startswith of tool parameter options
  (thanks to `@qiagu <https://github.com/qiagu>`__).
  `Pull Request 14440`_
* Fix console errors when stored workflow id hasn't been fetched yet
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14444`_
* Register trailing slashes in API routes
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14452`_
* Fix data_range_{min,max} parsing
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14456`_
* Fix doc versioning banner and other doc fixes
  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
  `Pull Request 14466`_
* Bump Gravity version to 0.13.3
  (thanks to `@natefoo <https://github.com/natefoo>`__).
  `Pull Request 14471`_
* Update error message when building ucsc_build_sites.txt fails
  (thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
  `Pull Request 14479`_

.. include:: 22.05_prs.rst