galaxy.datatypes.converters package =================================== .. automodule:: galaxy.datatypes.converters :members: :undoc-members: :show-inheritance: Submodules ---------- galaxy.datatypes.converters.bed\_to\_gff\_converter module ---------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.bed_to_gff_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.bgzip module ---------------------------------------- .. automodule:: galaxy.datatypes.converters.bgzip :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.cram\_to\_bam module ------------------------------------------------ .. automodule:: galaxy.datatypes.converters.cram_to_bam :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.fasta\_to\_len module ------------------------------------------------- .. automodule:: galaxy.datatypes.converters.fasta_to_len :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.fasta\_to\_tabular\_converter module ---------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.fasta_to_tabular_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.fastq\_to\_fqtoc module --------------------------------------------------- .. automodule:: galaxy.datatypes.converters.fastq_to_fqtoc :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.fastqsolexa\_to\_fasta\_converter module -------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.fastqsolexa_to_fasta_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.fastqsolexa\_to\_qual\_converter module ------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.fastqsolexa_to_qual_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.gff\_to\_bed\_converter module ---------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.gff_to_bed_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.gff\_to\_interval\_index\_converter module ---------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.gff_to_interval_index_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.interval\_to\_bed\_converter module --------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.interval_to_bed_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.interval\_to\_bedstrict\_converter module --------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.interval_to_bedstrict_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.interval\_to\_fli module ---------------------------------------------------- .. automodule:: galaxy.datatypes.converters.interval_to_fli :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.interval\_to\_interval\_index\_converter module --------------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.interval_to_interval_index_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.interval\_to\_tabix\_converter module ----------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.interval_to_tabix_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.lped\_to\_fped\_converter module ------------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.lped_to_fped_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.lped\_to\_pbed\_converter module ------------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.lped_to_pbed_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.maf\_to\_fasta\_converter module ------------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.maf_to_fasta_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.maf\_to\_interval\_converter module --------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.maf_to_interval_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.parquet\_to\_csv\_converter module -------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.parquet_to_csv_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.pbed\_ldreduced\_converter module ------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.pbed_ldreduced_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.pbed\_to\_lped\_converter module ------------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.pbed_to_lped_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.picard\_interval\_list\_to\_bed6\_converter module ------------------------------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.picard_interval_list_to_bed6_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.pileup\_to\_interval\_index\_converter module ------------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.pileup_to_interval_index_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.ref\_to\_seq\_taxonomy\_converter module -------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.ref_to_seq_taxonomy_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.tabular\_csv module ----------------------------------------------- .. automodule:: galaxy.datatypes.converters.tabular_csv :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.tabular\_to\_dbnsfp module ------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.tabular_to_dbnsfp :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.vcf\_to\_interval\_index\_converter module ---------------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.vcf_to_interval_index_converter :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.vcf\_to\_vcf\_bgzip module ------------------------------------------------------ .. automodule:: galaxy.datatypes.converters.vcf_to_vcf_bgzip :members: :undoc-members: :show-inheritance: galaxy.datatypes.converters.wiggle\_to\_simple\_converter module ---------------------------------------------------------------- .. automodule:: galaxy.datatypes.converters.wiggle_to_simple_converter :members: :undoc-members: :show-inheritance: